Arch Linux User Repository

The dependency on python-pywavelets (python2-pywavelets) is missing, so there are many import errors if it has not been installed.

The dependency was introduced in https://github.com/scikit-image/scikit-image/commit/c6e5c7095350e931709acd894a54b32c42375822

Please update the "depends" field in the PKGBUILD accordingly.

If you want the up-to-date package, and only the version for python 3, you can modify the PKGBUILD as below.

# Maintainer: Jaroslav Lichtblau <svetlemodry@archlinux.org>
# Contributor: Andrzej Giniewicz <gginiu@gmail.com>

#TODO (AUR optdepends): PyAMG, Astropy, SimpleITK, imread

pkgbase=python-scikit-image
pkgname=('python-scikit-image')
pkgver=0.13.0
pkgrel=1
pkgdesc="Image processing routines for SciPy"
arch=('i686' 'x86_64')
url="http://scikit-image.org/"
license=('BSD')
makedepends=('cython' 'python-six' 'python-scipy' 'python-matplotlib' 'python-networkx' 'python-pillow')
options=(!emptydirs)
source=(https://pypi.python.org/packages/f0/a2/918366ba9095ed4c07646be903c795f375d978ee418136eecb0571559719/scikit-image-0.13.0.tar.gz#md5=c92b682ed77b568218423b7afe454996)
sha256sums=('77a636bdc08c7668a15951894548c527f0c8c5c2abc86cb850de17551af51e3e')

prepare() {
cd "$srcdir"
}

build() {

msg "Building SciKit-Image for Python3"
cd "$srcdir"/scikit-image-$pkgver
python setup.py build
}

package_python-scikit-image() {
depends=('python-scipy' 'python-matplotlib' 'python-networkx' 'python-pillow')
optdepends=('python-pyqt4: for imshow(x, fancy=True) and skivi'
'freeimage: for reading various types of image file formats')
cd "$srcdir"/scikit-image-$pkgver

python setup.py install --root="$pkgdir"/ --optimize=1

install -D LICENSE.txt "$pkgdir"/usr/share/licenses/$pkgname/LICENSE
}

Since there is a python2-scikit-image package already, is it possible to make this PKGBUILD to build only python-scikit-image ?

Would it be possible to relax the dependency on python2-pillow to simply python2-imaging? Psychopy (https://aur.archlinux.org/packages/psychopy/) is supposedly incompatible with pillow but works with PIL. The scikit documentation suggests it works with both pillow and PIL.

I am sorry, fault seems to be on my side.
Building the package the way it is described in your link works fine.
Thanks for your help.

Cannot reproduce the error, package builds fine on my machine with the same command. You may try building it in a clean chroot as described on https://wiki.archlinux.org/index.php/DeveloperWiki:Building_in_a_Clean_Chroot#Convenience_Way

I get this when running "makepkg -sri":

==> Building Python2
Partial import of skimage during the build process.
Traceback (most recent call last):
File "setup.py", line 146, in <module>
**extra
File "/usr/lib/python2.7/site-packages/numpy/distutils/core.py", line 135, in setup
config = configuration()
File "setup.py", line 69, in configuration
config.add_subpackage('skimage')
File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage
caller_level = 2)
File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "skimage/setup.py", line 9, in configuration
config.add_subpackage('_shared')
File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage
caller_level = 2)
File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage
caller_level = caller_level + 1)
File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "skimage/_shared/setup.py", line 20, in configuration
config.add_extension('geometry', sources=['geometry.c'])
File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1485, in add_extension
ext = Extension(**ext_args)
File "/usr/lib/python2.7/site-packages/numpy/distutils/extension.py", line 52, in __init__
export_symbols)
TypeError: __init__() takes at most 4 arguments (13 given)
==> FEHLER: Ein Fehler geschah in build().
Breche ab...

wait, what am I even talking about... obviously we do have `dask` among the requirements: https://github.com/scikit-image/scikit-image/blob/master/requirements.txt

*deleted*

Actually I would make dask a non-optional dependency; note that in its absence, trying to start e.g. `skivi` (a program in /usr/bin provided by scikit-image) raises

Traceback (most recent call last):
File "/usr/bin/skivi", line 5, in <module>
from pkg_resources import load_entry_point
File "/usr/lib/python3.5/site-packages/pkg_resources/__init__.py", line 2928, in <module>
@_call_aside
File "/usr/lib/python3.5/site-packages/pkg_resources/__init__.py", line 2914, in _call_aside
f(*args, **kwargs)
File "/usr/lib/python3.5/site-packages/pkg_resources/__init__.py", line 2941, in _initialize_master_working_set
working_set = WorkingSet._build_master()
File "/usr/lib/python3.5/site-packages/pkg_resources/__init__.py", line 635, in _build_master
ws.require(__requires__)
File "/usr/lib/python3.5/site-packages/pkg_resources/__init__.py", line 943, in require
needed = self.resolve(parse_requirements(requirements))
File "/usr/lib/python3.5/site-packages/pkg_resources/__init__.py", line 829, in resolve
raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'dask[array]>=0.5.0' distribution was not found and is required by scikit-image