Package Details: r-deseq2 1.42.0-2

Git Clone URL: https://aur.archlinux.org/r-deseq2.git (read-only, click to copy)
Package Base: r-deseq2
Description: Differential gene expression analysis based on the negative binomial distribution.
Upstream URL: https://bioconductor.org/packages/DESeq2
Licenses: LGPL3
Submitter: vejnar
Maintainer: vejnar
Last Packager: vejnar
Votes: 2
Popularity: 0.000000
First Submitted: 2019-02-15 19:12 (UTC)
Last Updated: 2023-11-26 17:42 (UTC)

Latest Comments

pekkarr commented on 2023-11-04 15:07 (UTC)

Could you please fix the dependencies? The depends array in the PKGBUILD has now only the packages from the Depends field of the DESCRIPTION file, while the packages from the Imports field are missing. Those should be added to depends as well. Also, r-rcpparmadillo should be added to makedepends, because it's in the LinkingTo field while not being in Imports or Depends.

pekkarr commented on 2023-06-28 20:51 (UTC)

This fails to build in a clean chroot due to missing dependencies:

==> Starting package()...
ERROR: dependencies ‘BiocParallel’, ‘locfit’, ‘ggplot2’, ‘Rcpp’, ‘RcppArmadillo’ are not available for package ‘DESeq2’
* removing ‘/build/r-deseq2/pkg/r-deseq2/usr/lib/R/library/DESeq2’
==> ERROR: A failure occurred in package().