Package Details: rsem 1.3.3-1

Git Clone URL: https://aur.archlinux.org/rsem.git (read-only, click to copy)
Package Base: rsem
Description: accurate quantification of gene and isoform expression from RNA-Seq data
Upstream URL: http://deweylab.biostat.wisc.edu/rsem/
Licenses: GPL3
Submitter: greyltc
Maintainer: greyltc
Last Packager: greyltc
Votes: 3
Popularity: 0.000000
First Submitted: 2015-03-18 10:58 (UTC)
Last Updated: 2020-11-01 13:52 (UTC)

Dependencies (3)

Required by (0)

Sources (1)

Latest Comments

pwl commented on 2016-11-24 08:04 (UTC) (edited on 2016-11-24 08:15 (UTC) by pwl)

Hi, I managed to install the package without any trouble. I don't know if that was intentional but PKGBUILD didn't add /usr/bin/rsem to PATH. After adding it manually I tried to run one of the binaries and I got the following error. Do you have any idea where it might be coming from? $ rsem-calculate-expression Can't locate rsem_perl_utils.pm in @INC (you may need to install the rsem_perl_utils module) (@INC contains: /usr/bin/rsem /usr/lib/perl5/site_perl /usr/share/perl5/site_perl /usr/lib/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib/perl5/core_perl /usr/share/perl5/core_perl .) at /usr/bin/rsem/rsem-calculate-expression line 8. BEGIN failed--compilation aborted at /usr/bin/rsem/rsem-calculate-expression line 8. EDIT: I have just noticed that @apuapaquola had the same issue, copying the following entry from his PKGBUILD fixed the issue for me. mv `find . -maxdepth 1 -type f -perm -u+x` rsem_perl_utils.pm "${pkgdir}/usr/bin/${pkgname}/."

apuapaquola commented on 2016-01-22 23:21 (UTC)

rsem-prepare-reference complains it can't find the perl module rsem_perl_utils.pm and it is not present in the package. I've patched PKGBUILD to copy rsem_perl_utile to the installation, and put it in http://pastebin.com/EVUiEVbY