Package Details: samtools 1.8-1

Git Clone URL: https://aur.archlinux.org/samtools.git (read-only)
Package Base: samtools
Description: tools for manipulating next-generation sequencing data
Upstream URL: http://www.htslib.org/
Licenses: custom
Submitter: Vrob
Maintainer: alexpe87
Last Packager: alexpe87
Votes: 24
Popularity: 0.024125
First Submitted: 2009-11-04 21:48
Last Updated: 2018-05-04 07:03

Dependencies (3)

Sources (1)

Latest Comments

alexpe87 commented on 2017-11-05 16:01

Ncurses update from today fixed the issue again:

ncurses 6.0+20170902-3 (works)
ncurses 6.0+20170902-2 (does not work)

If your core repo isn't up to date yet, you could manually download the most current ncurses package and install manually with pacman -U <pkgname>.

https://www.archlinux.org/packages/core/x86_64/ncurses/

alexpe87 commented on 2017-11-01 13:10

Hm, looks like ncurses was updated 7 days ago (https://git.archlinux.org/svntogit/packages.git/log/trunk?h=packages/ncurses) and that seems to break the package. I'll have a look.

alienzj commented on 2017-11-01 02:29

make: *** [Makefile:126:bam_tview_curses.o] error 1

Compiled failed!

Hele me, please!
Thanks very much!

wookietreiber commented on 2017-05-20 15:03

updated.

Rhinoceros commented on 2017-05-20 11:49

Yes, this worked fine for me too, when the PKGBUILD was updated five days ago. However, I just tested again for you, and now it doesn't verify. I'm getting 4860d6a8f85c6965a7e82fb11afbde13

alexpe87 commented on 2017-05-20 11:01

Maybe they changed the uploaded file? It did for me ~2 days ago!

greyltc commented on 2017-05-20 09:46

the checksum here isn't verifying for me

wookietreiber commented on 2015-10-25 17:09

Thanks for letting me know, updated pkgrel.

masonmlai commented on 2015-10-24 01:09

Recent update to ncurses seems to break samtools:

samtools: error while loading shared libraries: libncursesw.so.5: cannot open shared object file: No such file or directory

wookietreiber commented on 2014-09-12 08:19

@MikeDacre: Done. Package now includes headers.

All comments