Package Details: samtools 1.6-1

Git Clone URL: https://aur.archlinux.org/samtools.git (read-only)
Package Base: samtools
Description: tools for manipulating next-generation sequencing data
Upstream URL: http://www.htslib.org/
Licenses: custom
Submitter: Vrob
Maintainer: alexpe87
Last Packager: alexpe87
Votes: 25
Popularity: 0.315921
First Submitted: 2009-11-04 21:48
Last Updated: 2017-09-29 09:50

Dependencies (3)

Sources (1)

Latest Comments

wookietreiber commented on 2017-05-20 15:03

updated.

Rhinoceros commented on 2017-05-20 11:49

Yes, this worked fine for me too, when the PKGBUILD was updated five days ago. However, I just tested again for you, and now it doesn't verify. I'm getting 4860d6a8f85c6965a7e82fb11afbde13

alexpe87 commented on 2017-05-20 11:01

Maybe they changed the uploaded file? It did for me ~2 days ago!

greyltc commented on 2017-05-20 09:46

the checksum here isn't verifying for me

wookietreiber commented on 2015-10-25 17:09

Thanks for letting me know, updated pkgrel.

masonmlai commented on 2015-10-24 01:09

Recent update to ncurses seems to break samtools:

samtools: error while loading shared libraries: libncursesw.so.5: cannot open shared object file: No such file or directory

wookietreiber commented on 2014-09-12 08:19

@MikeDacre: Done. Package now includes headers.

MikeDacre commented on 2014-09-11 22:23

This package does not allow the successful compilation of cufflinks. In order for cufflinks to work all of the header files have to be included.

Adding the following lines to package() solves the problem:

mkdir -p "$pkgdir/usr/include/bam"

install -Dm644 $srcdir/$pkgname-$pkgver/*.h "$pkgdir/usr/include/bam"

Rhinoceros commented on 2014-08-20 10:37

I'm really not sure. I wouldn't know where to look, either.

wookietreiber commented on 2014-08-19 06:06

Do pacaur and packer use different compiler options? IIRC /etc/makepkg.conf should be the place where to set up your arch linux compilation ...

All comments