Package Details: snakemake 5.10.0-1

Git Clone URL: https://aur.archlinux.org/snakemake.git (read-only, click to copy)
Package Base: snakemake
Description: Python-based language and execution environment for GNU Make-like workflows
Upstream URL: https://snakemake.readthedocs.io
Licenses: MIT
Submitter: kyleam
Maintainer: flying-sheep
Last Packager: flying-sheep
Votes: 5
Popularity: 0.000361
First Submitted: 2014-06-28 04:18
Last Updated: 2020-01-27 09:37

Dependencies (27)

Required by (0)

Sources (1)

Latest Comments

op3 commented on 2019-10-15 20:18

python-psutil is listed as an optional dependency, but the setup.py of the latest version requires it for installation.

op3 commented on 2019-02-16 19:44

xrootd is now in community and the python-bindings are in python-xrootd, so the optdepends have to be updated.

flying-sheep commented on 2018-12-07 11:38

done, thank you

a-ludi commented on 2018-12-06 08:20

The installation routine of this package depends on python-gitpython. Please add it to makedepends.

op3 commented on 2018-11-10 12:48

Optional dependencies:

  • python-jinja2 is now named python-jinja
  • python-biopython for GenBank/NCBI Entrez support
  • python-python-easywebdav for WebDAV support
  • python-pysftp for SFTP support
  • python-boto3 for AWS support
  • python-moto for AWS support
  • python-dropbox for Dropbox support
  • python-ftputil for FTP support
  • xrootd for XRootD support
  • python-psutil for benchmarking

$PKGDIR in PYTHONPATH (at the very end of the PKGBUILD) has to be replaced by $pkgdir.