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Package Details: snakemake 6.0.2-1
Git Clone URL: | https://aur.archlinux.org/snakemake.git (read-only, click to copy) |
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Package Base: | snakemake |
Description: | Python-based language and execution environment for GNU Make-like workflows |
Upstream URL: | https://snakemake.readthedocs.io |
Licenses: | |
Submitter: | kyleam |
Maintainer: | flying-sheep |
Last Packager: | flying-sheep |
Votes: | 7 |
Popularity: | 0.33 |
First Submitted: | 2014-06-28 04:18 |
Last Updated: | 2021-03-04 11:12 |
Dependencies (31)
- jupyter-nbformat
- python (python-dbg)
- python-appdirs (python-appdirs-git)
- python-configargparse
- python-datrie
- python-docutils
- python-filelock
- python-gitpython (python-gitpython-211)
- python-jsonschema (python-jsonschema26)
- python-psutil
- python-ratelimiter
- python-requests
- python-smart_open
- python-toposort
- python-wrapt
- python-yaml
- python-pulp>=2.0
- python-setuptools (make)
- python-biopython (optional) – For GenBank/NCBI Entrez support
- python-boto3 (optional) – For AWS support
- python-dropbox (optional) – For Dropbox support
- python-easywebdav (optional) – For WebDAV support
- python-ftputil (optional) – For FTP support
- python-jinja (optional) – For report generation
- python-moto (optional) – For AWS support
- python-networkx (python-networkx-1.11) (optional) – For report generation
- python-pygments (optional) – For report generation
- python-pygraphviz (optional) – For report generation
- python-pysftp (optional) – For SFTP support
- python-xrootd (optional) – For XRootD support
- slacker (optional) – For messaging
Latest Comments
op3 commented on 2019-10-15 20:18
python-psutil
is listed as an optional dependency, but the setup.py of the latest version requires it for installation.op3 commented on 2019-02-16 19:44
xrootd
is now in community and the python-bindings are inpython-xrootd
, so the optdepends have to be updated.flying-sheep commented on 2018-12-07 11:38
done, thank you
a-ludi commented on 2018-12-06 08:20
The installation routine of this package depends on
python-gitpython
. Please add it tomakedepends
.op3 commented on 2018-11-10 12:48
Optional dependencies:
$PKGDIR
inPYTHONPATH
(at the very end of the PKGBUILD) has to be replaced by$pkgdir
.