Package Details: star-cshl 2.7.10b-1

Git Clone URL: https://aur.archlinux.org/star-cshl.git (read-only, click to copy)
Package Base: star-cshl
Description: STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays
Upstream URL: https://github.com/alexdobin/STAR
Keywords: bioinformatics genomics science
Licenses: GPL3
Submitter: vejnar
Maintainer: vejnar
Last Packager: vejnar
Votes: 6
Popularity: 0.000326
First Submitted: 2014-04-16 23:30 (UTC)
Last Updated: 2022-11-23 20:09 (UTC)

Latest Comments

resol341 commented on 2022-02-23 05:20 (UTC)

It does seem the package depends on vim. Building without vim installed will throw "/bin/sh: line 1: xxd: command not found" error, which is solved when vim is installed. Thanks for keeping this updated!

cyrilccros commented on 2015-05-28 12:26 (UTC)

http://pastebin.com/useEf5u9 for the complete log It seems you don't need the move STAR STARlong line in your PKGBUILD, commenting it out works.

vejnar commented on 2015-05-27 16:30 (UTC)

@greyltc: Something went wrong while compiling I think. But the error message you provided is incomplete. Look what happen before that abort message.

greyltc commented on 2015-05-25 05:37 (UTC)

@vejnar, no, sorry I can't remember why I wrote that about the vim req. (or if it's even still true anymore!). Can you please check on the build? I just got a build failure: cannot stat 'STAR' No such file or directory ERROR: A failure occurred in build(). Aborting... ERROR: Makepkg was unable to build star-cshl.

vejnar commented on 2015-05-07 16:32 (UTC)

@alexpe87: Thanks. Updated :) @greyltc: Could you please show where this dependency is coming from? Thanks.

alexpe87 commented on 2015-05-07 11:04 (UTC)

2.4.1c is the newest version now. https://github.com/alexdobin/STAR/releases

greyltc commented on 2015-03-18 14:23 (UTC)

The build for this package depends on vim. Please update the PKGBUILD