Package Details: star-cshl 2.5.3a-1

Git Clone URL: https://aur.archlinux.org/star-cshl.git (read-only)
Package Base: star-cshl
Description: STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays
Upstream URL: https://github.com/alexdobin/STAR
Keywords: science
Licenses: GPL3
Submitter: vejnar
Maintainer: vejnar
Last Packager: vejnar
Votes: 3
Popularity: 0.000000
First Submitted: 2014-04-16 23:30
Last Updated: 2017-03-26 16:12

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Required by (0)

Sources (1)

Latest Comments

cyrilccros commented on 2015-05-28 12:26

http://pastebin.com/useEf5u9 for the complete log
It seems you don't need the move STAR STARlong line in your PKGBUILD, commenting it out works.

cyrilccros commented on 2015-05-28 12:20

I have the same error; here is the full message.
The error occurs after compiling STAR long version.
http://pastebin.com/useEf5u9

vejnar commented on 2015-05-27 16:30

@greyltc: Something went wrong while compiling I think. But the error message you provided is incomplete. Look what happen before that abort message.

greyltc commented on 2015-05-25 05:37

@vejnar, no, sorry I can't remember why I wrote that about the vim req. (or if it's even still true anymore!).

Can you please check on the build? I just got a build failure:
cannot stat 'STAR'
No such file or directory
ERROR: A failure occurred in build().
Aborting...
ERROR: Makepkg was unable to build star-cshl.

vejnar commented on 2015-05-07 16:32

@alexpe87: Thanks. Updated :)

@greyltc: Could you please show where this dependency is coming from? Thanks.

alexpe87 commented on 2015-05-07 11:04

2.4.1c is the newest version now.
https://github.com/alexdobin/STAR/releases

greyltc commented on 2015-03-18 14:23

The build for this package depends on vim. Please update the PKGBUILD