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Package Details: tophat 2.1.2-3

Package Actions

Git Clone URL:	https://aur.archlinux.org/tophat.git (read-only, click to copy)
Package Base:	tophat
Description:	fast splice junction mapper for RNA-Seq reads
Upstream URL:	http://ccb.jhu.edu/software/tophat/index.shtml
Licenses:	custom
Submitter:	stratust
Maintainer:	malacology (BioArchLinuxBot, sukanka)
Last Packager:	BioArchLinuxBot
Votes:	10
Popularity:	0.000000
First Submitted:	2012-01-20 00:50 (UTC)
Last Updated:	2023-06-01 21:28 (UTC)

Dependencies (5)

boost-libs (boost-libs-git^AUR)
bowtie2^AUR (bowtie2-bin^AUR, bowtie2-git^AUR)
python (python37^AUR, python311^AUR, python310^AUR)
boost (boost-git^AUR) (make)
clang (llvm-rocm-git^AUR, llvm-git^AUR, clang-minimal-git^AUR) (make)

Required by (2)

ugene-bin (optional)
ugene-git (optional)

Sources (3)

Latest Comments

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buttons commented on 2012-09-20 20:07 (UTC)

This did not compile for me without the following line added to the PKGBUILD: export LDFLAGS="-lboost_system" This is due to new linker rules: http://fedoraproject.org/wiki/UnderstandingDSOLinkChange

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