Package Details: transabyss 1.5.3-1

Git Clone URL: (read-only, click to copy)
Package Base: transabyss
Description: de novo assembly of RNA-Seq data using ABySS
Upstream URL:
Licenses: custom
Submitter: wookietreiber
Maintainer: None
Last Packager: wookietreiber
Votes: 1
Popularity: 0.000000
First Submitted: 2015-01-30 11:47
Last Updated: 2015-06-13 09:58

Dependencies (9)

Required by (0)

Sources (3)

Latest Comments

wookietreiber commented on 2015-03-16 10:27

@cyrilccros: blat and twoBitToFa are not provided by transabyss directly but by their dependencies. So, the conflicts should not be with transabyss but with these dependencies and ucsc-kent-genome-tools. Thus, you have to report these issues to these packages.

cyrilccros commented on 2015-03-16 09:19

Thanks for the package, but I see some existing file conflicts with the AUR packages ucsc-kent-genome-tools which already provides utilities such as Blat and twoBitToFa. IMO it may be better to use this one...