Package Details: ucsc-kent-genome-tools 405-1

Git Clone URL: https://aur.archlinux.org/ucsc-kent-genome-tools.git (read-only, click to copy)
Package Base: ucsc-kent-genome-tools
Description: UCSC Kent bioinformatics utilities: kent source utilities
Upstream URL: http://hgdownload.soe.ucsc.edu/admin/exe/
Licenses: custom:UCSC
Submitter: greyltc
Maintainer: greyltc
Last Packager: greyltc
Votes: 4
Popularity: 0.000000
First Submitted: 2015-02-04 08:04 (UTC)
Last Updated: 2020-11-01 19:30 (UTC)

Latest Comments

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matrs commented on 2016-03-22 13:46 (UTC)

install fails : Proceed with installation? [Y/n] y Edit ucsc-kent-genome-tools PKGBUILD with $EDITOR? [Y/n] n Edit ucsc-kent-genome-tools.install with $EDITOR? [Y/n] n ==> ERROR: license should be an array The build failed.

greyltc commented on 2016-01-08 15:19 (UTC)

updated to 326. sorry for the delay!

anpu commented on 2015-11-23 23:13 (UTC)

updated PKGBUILD (v324 released 2015-11-04, see http://hgdownload.cse.ucsc.edu/admin/exe/) # Maintainer: Grey Christoforo <grey at christoforo dot net> pkgname=ucsc-kent-genome-tools pkgver=324 pkgrel=1 pkgdesc="UCSC genome browser 'kent' bioinformatic utilities" arch=('i686' 'x86_64') url="http://hgdownload.soe.ucsc.edu/admin/exe/" license=other install=$pkgname.install depends=('mariadb-clients' 'libpng' 'openssl') source=(http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v${pkgver}.src.tgz) sha1sums=('21b51fca1e8034129ece70d680c21db6a493a8dd') build() { cd "${srcdir}/userApps/" make } package() { cd "${srcdir}/userApps/" mkdir -p "${pkgdir}/usr/bin/" mv bin/ "${pkgdir}/usr/bin/kentUtils/" mkdir -p "$pkgdir/etc/profile.d" echo "export PATH=/usr/bin/kentUtils:"'$PATH' > "$pkgdir/etc/profile.d/kentUtils.sh" mkdir -p "${pkgdir}/opt/kentUtils/" cat > "${pkgdir}/opt/kentUtils/.hg.conf" <<EOF db.host=genome-mysql.cse.ucsc.edu db.user=genomep db.password=password central.db=hgcentral EOF install -D -m644 licenseUcscGenomeBrowser.txt "${pkgdir}/usr/share/licenses/kentUtils/licenseUcscGenomeBrowser.txt" install -D -m644 GenomeBrowserLicense.pdf "${pkgdir}/usr/share/licenses/kentUtils/GenomeBrowserLicense.pdf" install -D -m644 licenseBlat.txt "${pkgdir}/usr/share/licenses/kentUtils/licenseBlat.txt" } # vim:set ts=2 sw=2 et:

greyltc commented on 2015-07-29 17:46 (UTC)

This package installs a large number of binaries. Some of the names of those collide with other binaries from random packages that you might not expect. This is a workaround.

flying-sheep commented on 2015-07-29 14:49 (UTC)

hi, a question: why do you put them into /usr/bin/kentUtils instead of somewhere in the PATH (e.g. /usr/bin)?