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Package Details: unicycler 0.5.0-1
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| Git Clone URL: | https://aur.archlinux.org/unicycler.git (read-only, click to copy) |
|---|---|
| Package Base: | unicycler |
| Description: | Hybrid assembly pipeline for bacterial genomes. |
| Upstream URL: | https://github.com/rrwick/Unicycler/ |
| Licenses: | GPL |
| Submitter: | PumpkinCheshire |
| Maintainer: | PumpkinCheshire |
| Last Packager: | PumpkinCheshire |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2021-06-28 07:18 (UTC) |
| Last Updated: | 2022-01-26 02:13 (UTC) |
Dependencies (9)
- clang (llvm-gitAUR, clang-minimal-gitAUR, clang17-binAUR) (make)
- gcc (gcc-gitAUR, gccrs-gitAUR, gcc-snapshotAUR) (make)
- python-setuptools (make)
- blast+AUR (blast+-binAUR) (optional) – rotating circular contigs
- bowtie2AUR (bowtie2-binAUR, bowtie2-gitAUR) (optional) – polishing
- pilonAUR (pilonAUR) (optional) – polishing
- raconAUR (racon-gitAUR) (optional) – long-read or hybrid assembly
- samtoolsAUR (samtools-gitAUR) (optional) – polishing
- spades (optional) – short read or hybird assembly