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Package Details: unicycler 0.5.0-1
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| Git Clone URL: | https://aur.archlinux.org/unicycler.git (read-only, click to copy) |
|---|---|
| Package Base: | unicycler |
| Description: | Hybrid assembly pipeline for bacterial genomes. |
| Upstream URL: | https://github.com/rrwick/Unicycler/ |
| Licenses: | GPL |
| Submitter: | PumpkinCheshire |
| Maintainer: | PumpkinCheshire |
| Last Packager: | PumpkinCheshire |
| Votes: | 0 |
| Popularity: | 0.000000 |
| First Submitted: | 2021-06-28 07:18 (UTC) |
| Last Updated: | 2022-01-26 02:13 (UTC) |
Dependencies (9)
- clang (clang8, clang-git, llvm-git, llvm-minimal-git) (make)
- gcc (gccrs-git, gcc-git) (make)
- python-setuptools (make)
- blast+ (blast+-bin) (optional) – rotating circular contigs
- bowtie2 (bowtie2-git, bowtie2-bin) (optional) – polishing
- pilon (pilon) (optional) – polishing
- racon (racon-git) (optional) – long-read or hybrid assembly
- samtools (samtools-git) (optional) – polishing
- spades (spades) (optional) – short read or hybird assembly