358 packages found. Page 1 of 8.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-metabosignal 1.34.0-1 0 0.00 MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways BioArchLinuxBot 2024-05-04 18:28 (UTC)
r-omnipathr 3.11.10-1 0 0.00 OmniPath web service client and more BioArchLinuxBot 2024-05-04 12:14 (UTC)
r-keggandmetacoredzpathwaysgeo 1.24.0-1 0 0.00 Disease Datasets from GEO BioArchLinuxBot 2024-05-04 00:49 (UTC)
r-keggdzpathwaysgeo 1.42.0-1 0 0.00 KEGG Disease Datasets from GEO BioArchLinuxBot 2024-05-04 00:43 (UTC)
r-seq2pathway.data 1.36.0-1 0 0.00 data set for R package seq2pathway BioArchLinuxBot 2024-05-04 00:14 (UTC)
r-iseepathways 1.2.0-1 0 0.00 iSEE extension for panels related to pathway analysis pekkarr 2024-05-03 18:48 (UTC)
r-tbsignatureprofiler 1.16.0-1 0 0.00 Profile RNA-Seq Data Using TB Pathway Signatures BioArchLinuxBot 2024-05-03 18:37 (UTC)
r-oppar 1.32.0-1 0 0.00 Outlier profile and pathway analysis in R BioArchLinuxBot 2024-05-03 18:34 (UTC)
r-progeny 1.26.0-1 0 0.00 Pathway RespOnsive GENes for activity inference from gene expression BioArchLinuxBot 2024-05-03 18:22 (UTC)
r-clipper 1.44.0-1 0 0.00 Gene Set Analysis Exploiting Pathway Topology BioArchLinuxBot 2024-05-03 13:13 (UTC)
r-panomir 1.8.0-1 0 0.00 Detection of miRNAs that regulate interacting groups of pathways pekkarr 2024-05-03 12:28 (UTC)
r-sspaths 1.18.0-1 0 0.00 ssPATHS: Single Sample PATHway Score BioArchLinuxBot 2024-05-03 07:58 (UTC)
r-spia 2.56.0-1 0 0.00 Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations BioArchLinuxBot 2024-05-03 07:02 (UTC)
r-metaphor 1.6.0-1 0 0.00 Metabolic Pathway Analysis of RNA pekkarr 2024-05-03 04:11 (UTC)
r-reactomepa 1.48.0-1 0 0.00 Reactome Pathway Analysis BioArchLinuxBot 2024-05-03 02:21 (UTC)
r-past 1.20.0-1 0 0.00 Pathway Association Study Tool (PAST) BioArchLinuxBot 2024-05-03 01:08 (UTC)
r-sbgnview 1.18.0-1 0 0.00 "SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways" BioArchLinuxBot 2024-05-02 23:34 (UTC)
r-seq2pathway 1.36.0-1 0 0.00 a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data BioArchLinuxBot 2024-05-02 23:16 (UTC)
r-pwomics 1.36.0-1 0 0.00 Pathway-based data integration of omics data BioArchLinuxBot 2024-05-02 23:13 (UTC)
r-chronos 1.32.0-1 0 0.00 CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis BioArchLinuxBot 2024-05-02 23:09 (UTC)
r-hipathia 3.4.0-1 0 0.00 HiPathia: High-throughput Pathway Analysis BioArchLinuxBot 2024-05-02 22:31 (UTC)
r-padma 1.14.0-1 0 0.00 Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis BioArchLinuxBot 2024-05-02 22:29 (UTC)
r-desubs 1.30.0-1 0 0.00 DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments BioArchLinuxBot 2024-05-02 22:13 (UTC)
r-pathostat 1.30.0-1 0 0.00 PathoStat Statistical Microbiome Analysis Package BioArchLinuxBot 2024-05-02 22:10 (UTC)
r-sipsic 1.4.0-1 0 0.00 Calculate Pathway Scores for Each Cell in scRNA-Seq Data pekkarr 2024-05-02 21:50 (UTC)
r-padog 1.46.0-1 0 0.00 Pathway Analysis with Down-weighting of Overlapping Genes (PADOG) BioArchLinuxBot 2024-05-02 21:08 (UTC)
r-kegglincs 1.30.0-1 0 0.00 Visualize all edges within a KEGG pathway and overlay LINCS data BioArchLinuxBot 2024-05-02 21:07 (UTC)
r-ggkegg 1.2.0-1 0 0.00 KEGG pathway visualization by ggplot2 pekkarr 2024-05-02 21:04 (UTC)
r-dce 1.12.0-1 0 0.00 Pathway Enrichment Based on Differential Causal Effects BioArchLinuxBot 2024-05-02 21:03 (UTC)
r-pathview 1.44.0-1 0 0.00 a tool set for pathway based data integration and visualization BioArchLinuxBot 2024-05-02 21:00 (UTC)
r-mirintegrator 1.34.0-1 0 0.00 Integrating microRNA expression into signaling pathways for pathway analysis BioArchLinuxBot 2024-05-02 20:59 (UTC)
r-ssnappy 1.8.0-1 0 0.00 Single Sample directioNAl Pathway Perturbation analYsis pekkarr 2024-05-02 20:58 (UTC)
r-gage 2.54.0-1 0 0.00 Generally Applicable Gene-set Enrichment for Pathway Analysis BioArchLinuxBot 2024-05-02 20:47 (UTC)
r-phenopath 1.28.0-1 0 0.00 Genomic trajectories with heterogeneous genetic and environmental backgrounds BioArchLinuxBot 2024-05-02 19:44 (UTC)
r-sigsquared 1.36.0-1 0 0.00 Gene signature generation for functionally validated signaling pathways BioArchLinuxBot 2024-05-02 12:37 (UTC)
r-ncigraph 1.52.0-1 0 0.00 Pathways from the NCI Pathways Database BioArchLinuxBot 2024-05-02 05:52 (UTC)
r-biocartaimage 1.2.0-1 0 0.00 BioCarta Pathway Images pekkarr 2024-05-02 04:47 (UTC)
r-pathwaypca 1.20.0-1 0 0.00 Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection BioArchLinuxBot 2024-05-02 04:39 (UTC)
r-pcxndata 2.25.0-1 0 0.00 Correlation coefficients and p values between pre-defined pathway/gene sets BioArchLinuxBot 2024-05-02 04:23 (UTC)
r-mirnapath 1.64.0-1 0 0.00 Pathway Enrichment for miRNA Expression Data BioArchLinuxBot 2024-05-02 04:00 (UTC)
r-pathnet 1.44.0-1 0 0.00 An R package for pathway analysis using topological information BioArchLinuxBot 2024-05-02 03:59 (UTC)
r-props 1.26.0-1 0 0.00 PRObabilistic Pathway Score (PROPS) BioArchLinuxBot 2024-05-02 02:46 (UTC)
r-gep2pep 1.24.0-1 0 0.00 Creation and Analysis of Pathway Expression Profiles (PEPs) BioArchLinuxBot 2024-05-02 02:33 (UTC)
r-multigsea 1.14.0-1 0 0.00 Combining GSEA-based pathway enrichment with multi omics data integration BioArchLinuxBot 2024-05-02 02:24 (UTC)
r-metapone 1.10.0-1 0 0.00 Conducts pathway test of metabolomics data using a weighted permutation test BioArchLinuxBot 2024-05-02 02:21 (UTC)
r-graphite 1.50.0-1 0 0.00 GRAPH Interaction from pathway Topological Environment BioArchLinuxBot 2024-05-02 01:31 (UTC)
r-pathrender 1.72.0-1 0 0.00 Render molecular pathways BioArchLinuxBot 2024-05-02 01:29 (UTC)
r-sitepath 1.20.0-1 0 0.00 Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations BioArchLinuxBot 2024-05-02 01:07 (UTC)
r-hpip 1.10.0-1 0 0.00 Host-Pathogen Interaction Prediction BioArchLinuxBot 2024-05-01 23:34 (UTC)
r-gmrp 1.32.0-1 0 0.00 GWAS-based Mendelian Randomization and Path Analyses BioArchLinuxBot 2024-05-01 22:28 (UTC)

358 packages found. Page 1 of 8.

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