|
r-icheck
|
1.34.0-1 |
0 |
0.00
|
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data |
BioArchLinuxBot
|
2024-05-03 15:21 (UTC) |
|
r-mineica
|
1.44.0-1 |
0 |
0.00
|
Analysis of an ICA decomposition obtained on genomics data |
BioArchLinuxBot
|
2024-05-03 15:18 (UTC) |
|
r-meal
|
1.34.0-1 |
0 |
0.00
|
Perform methylation analysis |
BioArchLinuxBot
|
2024-05-03 15:16 (UTC) |
|
r-methylgsa
|
1.22.0-1 |
0 |
0.00
|
Gene Set Analysis Using the Outcome of Differential Methylation |
BioArchLinuxBot
|
2024-05-03 15:13 (UTC) |
|
r-blacksheepr
|
1.18.0-1 |
0 |
0.00
|
Outlier Analysis for pairwise differential comparison |
BioArchLinuxBot
|
2024-05-03 14:58 (UTC) |
|
r-flagme
|
1.60.0-1 |
0 |
0.00
|
Analysis of Metabolomics GC/MS Data |
BioArchLinuxBot
|
2024-05-03 14:51 (UTC) |
|
r-mait
|
1.38.0-1 |
0 |
0.00
|
Statistical Analysis of Metabolomic Data |
BioArchLinuxBot
|
2024-05-03 14:49 (UTC) |
|
r-yapsa
|
1.30.0-1 |
0 |
0.00
|
Yet Another Package for Signature Analysis |
BioArchLinuxBot
|
2024-05-03 14:47 (UTC) |
|
r-dreamlet
|
1.2.0-1 |
0 |
0.00
|
Scalable differential expression analysis of single cell transcriptomics datasets with complex study designs |
pekkarr
|
2024-05-03 14:42 (UTC) |
|
r-categorycompare
|
1.48.0-1 |
0 |
0.00
|
Meta-analysis of high-throughput experiments using feature annotations |
BioArchLinuxBot
|
2024-05-03 14:32 (UTC) |
|
r-conumee
|
1.38.0-1 |
0 |
0.00
|
Enhanced copy-number variation analysis using Illumina DNA methylation arrays |
BioArchLinuxBot
|
2024-05-03 14:29 (UTC) |
|
r-a4
|
1.52.0-1 |
0 |
0.00
|
Automated Affymetrix Array Analysis Umbrella Package |
BioArchLinuxBot
|
2024-05-03 14:10 (UTC) |
|
r-omicrexposome
|
1.26.0-1 |
0 |
0.00
|
Exposome and omic data associatin and integration analysis |
BioArchLinuxBot
|
2024-05-03 14:09 (UTC) |
|
r-pairedgsea
|
1.4.0-1 |
0 |
0.00
|
Paired DGE and DGS analysis for gene set enrichment analysis |
pekkarr
|
2024-05-03 14:08 (UTC) |
|
r-qsvar
|
1.8.0-1 |
0 |
0.00
|
Generate Quality Surrogate Variable Analysis for Degradation Correction |
pekkarr
|
2024-05-03 14:05 (UTC) |
|
r-geoexplorer
|
1.10.0-1 |
0 |
0.00
|
a webserver for gene expression analysis and visualisation |
BioArchLinuxBot
|
2024-05-03 14:03 (UTC) |
|
r-debrowser
|
1.32.0-1 |
0 |
0.00
|
Interactive Differential Expresion Analysis Browser |
BioArchLinuxBot
|
2024-05-03 13:56 (UTC) |
|
r-ballgown
|
2.36.0-1 |
0 |
0.00
|
Flexible, isoform-level differential expression analysis |
BioArchLinuxBot
|
2024-05-03 13:50 (UTC) |
|
r-crossmeta
|
1.30.0-1 |
0 |
0.00
|
Cross Platform Meta-Analysis of Microarray Data |
BioArchLinuxBot
|
2024-05-03 13:50 (UTC) |
|
r-spicyr
|
1.16.0-1 |
0 |
0.00
|
Spatial analysis of in situ cytometry data |
BioArchLinuxBot
|
2024-05-03 13:43 (UTC) |
|
r-riboprofiling
|
1.34.0-1 |
0 |
0.00
|
Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation |
BioArchLinuxBot
|
2024-05-03 13:31 (UTC) |
|
r-intansv
|
1.44.0-1 |
0 |
0.00
|
Integrative analysis of structural variations |
BioArchLinuxBot
|
2024-05-03 13:24 (UTC) |
|
r-visse
|
1.12.0-1 |
0 |
0.00
|
Visualising Set Enrichment Analysis Results |
BioArchLinuxBot
|
2024-05-03 13:16 (UTC) |
|
r-zenith
|
1.6.0-1 |
0 |
0.00
|
Gene set analysis following differential expression using linear (mixed) modeling with dream |
pekkarr
|
2024-05-03 13:15 (UTC) |
|
r-clipper
|
1.44.0-1 |
0 |
0.00
|
Gene Set Analysis Exploiting Pathway Topology |
BioArchLinuxBot
|
2024-05-03 13:13 (UTC) |
|
r-phenotest
|
1.52.0-1 |
0 |
0.00
|
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation. |
BioArchLinuxBot
|
2024-05-03 13:09 (UTC) |
|
r-a4base
|
1.52.0-1 |
0 |
0.00
|
Automated Affymetrix Array Analysis Base Package |
BioArchLinuxBot
|
2024-05-03 13:02 (UTC) |
|
r-sva
|
3.52.0-1 |
0 |
0.00
|
Surrogate Variable Analysis |
BioArchLinuxBot
|
2024-05-03 13:02 (UTC) |
|
python-mdanalysis
|
2.7.0-1 |
1 |
0.00
|
An object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, or Amber. |
hseara
|
2024-05-03 12:59 (UTC) |
|
r-sarc
|
1.2.0-1 |
0 |
0.00
|
Statistical Analysis of Regions with CNVs |
pekkarr
|
2024-05-03 12:50 (UTC) |
|
r-mcsea
|
1.24.0-1 |
0 |
0.00
|
Methylated CpGs Set Enrichment Analysis |
BioArchLinuxBot
|
2024-05-03 12:48 (UTC) |
|
r-vulcan
|
1.26.0-1 |
0 |
0.00
|
VirtUaL ChIP-Seq data Analysis using Networks |
BioArchLinuxBot
|
2024-05-03 12:35 (UTC) |
|
r-guideseq
|
1.34.0-1 |
0 |
0.00
|
GUIDE-seq analysis pipeline |
BioArchLinuxBot
|
2024-05-03 12:32 (UTC) |
|
r-redseq
|
1.50.0-1 |
0 |
0.00
|
Analysis of high-throughput sequencing data processed by restriction enzyme digestion |
BioArchLinuxBot
|
2024-05-03 12:31 (UTC) |
|
r-splinetimer
|
1.32.0-1 |
0 |
0.00
|
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction |
BioArchLinuxBot
|
2024-05-03 12:28 (UTC) |
|
r-cpvsnp
|
1.36.0-1 |
0 |
0.00
|
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets |
BioArchLinuxBot
|
2024-05-03 12:26 (UTC) |
|
r-bicare
|
1.62.0-1 |
0 |
0.00
|
Biclustering Analysis and Results Exploration |
BioArchLinuxBot
|
2024-05-03 12:23 (UTC) |
|
r-aucell
|
1.26.0-1 |
0 |
0.00
|
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) |
BioArchLinuxBot
|
2024-05-03 12:21 (UTC) |
|
r-signaturesearch
|
1.18.0-1 |
0 |
0.00
|
Environment for Gene Expression Searching Combined with Functional Enrichment Analysis |
BioArchLinuxBot
|
2024-05-03 12:18 (UTC) |
|
r-umi4cats
|
1.14.0-1 |
0 |
0.00
|
UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data |
BioArchLinuxBot
|
2024-05-03 12:15 (UTC) |
|
r-drugvsdisease
|
2.46.0-1 |
0 |
0.00
|
Comparison of disease and drug profiles using Gene set Enrichment Analysis |
BioArchLinuxBot
|
2024-05-03 12:13 (UTC) |
|
r-gnosis
|
1.2.0-1 |
0 |
0.00
|
Genomics explorer using statistical and survival analysis in R |
pekkarr
|
2024-05-03 09:37 (UTC) |
|
r-imcrtools
|
1.10.0-1 |
0 |
0.00
|
Methods for imaging mass cytometry data analysis |
BioArchLinuxBot
|
2024-05-03 09:29 (UTC) |
|
r-amaretto
|
1.20.0-1 |
0 |
0.00
|
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression |
BioArchLinuxBot
|
2024-05-03 09:25 (UTC) |
|
r-sesame
|
1.22.0-1 |
0 |
0.00
|
SEnsible Step-wise Analysis of DNA MEthylation BeadChips |
BioArchLinuxBot
|
2024-05-03 09:24 (UTC) |
|
r-diffbind
|
3.14.0-1 |
0 |
0.00
|
Differential Binding Analysis of ChIP-Seq Peak Data |
BioArchLinuxBot
|
2024-05-03 09:19 (UTC) |
|
r-spiat
|
1.6.0-1 |
0 |
0.00
|
Spatial Image Analysis of Tissues |
pekkarr
|
2024-05-03 09:12 (UTC) |
|
r-omicspca
|
1.22.0-1 |
0 |
0.00
|
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples |
BioArchLinuxBot
|
2024-05-03 08:51 (UTC) |
|
r-structtoolbox
|
1.16.0-1 |
0 |
0.00
|
Data processing & analysis tools for Metabolomics and other omics |
BioArchLinuxBot
|
2024-05-03 08:49 (UTC) |
|
r-spaniel
|
1.18.0-1 |
0 |
0.00
|
Spatial Transcriptomics Analysis |
BioArchLinuxBot
|
2024-05-03 08:41 (UTC) |