1279 packages found. Page 23 of 26.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-signaturesearch 1.18.0-1 0 0.00 Environment for Gene Expression Searching Combined with Functional Enrichment Analysis BioArchLinuxBot 2024-05-03 12:18 (UTC)
r-aucell 1.26.0-1 0 0.00 AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) BioArchLinuxBot 2024-05-03 12:21 (UTC)
r-bicare 1.62.0-1 0 0.00 Biclustering Analysis and Results Exploration BioArchLinuxBot 2024-05-03 12:23 (UTC)
r-cpvsnp 1.36.0-1 0 0.00 Gene set analysis methods for SNP association p-values that lie in genes in given gene sets BioArchLinuxBot 2024-05-03 12:26 (UTC)
r-splinetimer 1.32.0-1 0 0.00 Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction BioArchLinuxBot 2024-05-03 12:28 (UTC)
r-redseq 1.50.0-1 0 0.00 Analysis of high-throughput sequencing data processed by restriction enzyme digestion BioArchLinuxBot 2024-05-03 12:31 (UTC)
r-guideseq 1.34.0-1 0 0.00 GUIDE-seq analysis pipeline BioArchLinuxBot 2024-05-03 12:32 (UTC)
r-vulcan 1.26.0-1 0 0.00 VirtUaL ChIP-Seq data Analysis using Networks BioArchLinuxBot 2024-05-03 12:35 (UTC)
r-mcsea 1.24.0-1 0 0.00 Methylated CpGs Set Enrichment Analysis BioArchLinuxBot 2024-05-03 12:48 (UTC)
r-sarc 1.2.0-1 0 0.00 Statistical Analysis of Regions with CNVs pekkarr 2024-05-03 12:50 (UTC)
python-mdanalysis 2.7.0-1 1 0.00 An object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, or Amber. hseara 2024-05-03 12:59 (UTC)
r-sva 3.52.0-1 0 0.00 Surrogate Variable Analysis BioArchLinuxBot 2024-05-03 13:02 (UTC)
r-a4base 1.52.0-1 0 0.00 Automated Affymetrix Array Analysis Base Package BioArchLinuxBot 2024-05-03 13:02 (UTC)
r-phenotest 1.52.0-1 0 0.00 Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation. BioArchLinuxBot 2024-05-03 13:09 (UTC)
r-clipper 1.44.0-1 0 0.00 Gene Set Analysis Exploiting Pathway Topology BioArchLinuxBot 2024-05-03 13:13 (UTC)
r-zenith 1.6.0-1 0 0.00 Gene set analysis following differential expression using linear (mixed) modeling with dream pekkarr 2024-05-03 13:15 (UTC)
r-visse 1.12.0-1 0 0.00 Visualising Set Enrichment Analysis Results BioArchLinuxBot 2024-05-03 13:16 (UTC)
r-intansv 1.44.0-1 0 0.00 Integrative analysis of structural variations BioArchLinuxBot 2024-05-03 13:24 (UTC)
r-riboprofiling 1.34.0-1 0 0.00 Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation BioArchLinuxBot 2024-05-03 13:31 (UTC)
r-crossmeta 1.30.0-1 0 0.00 Cross Platform Meta-Analysis of Microarray Data BioArchLinuxBot 2024-05-03 13:50 (UTC)
r-ballgown 2.36.0-1 0 0.00 Flexible, isoform-level differential expression analysis BioArchLinuxBot 2024-05-03 13:50 (UTC)
r-debrowser 1.32.0-1 0 0.00 Interactive Differential Expresion Analysis Browser BioArchLinuxBot 2024-05-03 13:56 (UTC)
r-geoexplorer 1.10.0-1 0 0.00 a webserver for gene expression analysis and visualisation BioArchLinuxBot 2024-05-03 14:03 (UTC)
r-qsvar 1.8.0-1 0 0.00 Generate Quality Surrogate Variable Analysis for Degradation Correction pekkarr 2024-05-03 14:05 (UTC)
r-pairedgsea 1.4.0-1 0 0.00 Paired DGE and DGS analysis for gene set enrichment analysis pekkarr 2024-05-03 14:08 (UTC)
r-omicrexposome 1.26.0-1 0 0.00 Exposome and omic data associatin and integration analysis BioArchLinuxBot 2024-05-03 14:09 (UTC)
r-a4 1.52.0-1 0 0.00 Automated Affymetrix Array Analysis Umbrella Package BioArchLinuxBot 2024-05-03 14:10 (UTC)
r-conumee 1.38.0-1 0 0.00 Enhanced copy-number variation analysis using Illumina DNA methylation arrays BioArchLinuxBot 2024-05-03 14:29 (UTC)
r-categorycompare 1.48.0-1 0 0.00 Meta-analysis of high-throughput experiments using feature annotations BioArchLinuxBot 2024-05-03 14:32 (UTC)
r-yapsa 1.30.0-1 0 0.00 Yet Another Package for Signature Analysis BioArchLinuxBot 2024-05-03 14:47 (UTC)
r-mait 1.38.0-1 0 0.00 Statistical Analysis of Metabolomic Data BioArchLinuxBot 2024-05-03 14:49 (UTC)
r-flagme 1.60.0-1 0 0.00 Analysis of Metabolomics GC/MS Data BioArchLinuxBot 2024-05-03 14:51 (UTC)
r-blacksheepr 1.18.0-1 0 0.00 Outlier Analysis for pairwise differential comparison BioArchLinuxBot 2024-05-03 14:58 (UTC)
r-methylgsa 1.22.0-1 0 0.00 Gene Set Analysis Using the Outcome of Differential Methylation BioArchLinuxBot 2024-05-03 15:13 (UTC)
r-meal 1.34.0-1 0 0.00 Perform methylation analysis BioArchLinuxBot 2024-05-03 15:16 (UTC)
r-mineica 1.44.0-1 0 0.00 Analysis of an ICA decomposition obtained on genomics data BioArchLinuxBot 2024-05-03 15:18 (UTC)
r-icheck 1.34.0-1 0 0.00 QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data BioArchLinuxBot 2024-05-03 15:21 (UTC)
r-netzoor 1.8.0-1 0 0.00 Unified methods for the inference and analysis of gene regulatory networks pekkarr 2024-05-03 15:24 (UTC)
r-bigmelon 1.30.0-1 0 0.00 Illumina methylation array analysis for large experiments BioArchLinuxBot 2024-05-03 15:26 (UTC)
r-trackviewer 1.40.0-1 0 0.00 A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data BioArchLinuxBot 2024-05-03 18:19 (UTC)
r-tfbstools 1.42.0-1 0 0.00 Software Package for Transcription Factor Binding Site (TFBS) Analysis BioArchLinuxBot 2024-05-03 18:32 (UTC)
r-oppar 1.32.0-1 0 0.00 Outlier profile and pathway analysis in R BioArchLinuxBot 2024-05-03 18:34 (UTC)
r-iseede 1.2.0-1 0 0.00 iSEE extension for panels related to differential expression analysis pekkarr 2024-05-03 18:46 (UTC)
r-iseepathways 1.2.0-1 0 0.00 iSEE extension for panels related to pathway analysis pekkarr 2024-05-03 18:48 (UTC)
r-sangeranalyser 1.14.0-1 0 0.00 sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R BioArchLinuxBot 2024-05-03 18:50 (UTC)
r-monalisa 1.10.0-1 0 0.00 Binned Motif Enrichment Analysis and Visualization BioArchLinuxBot 2024-05-03 19:01 (UTC)
r-agimicrorna 2.54.0-1 0 0.00 Processing and Differential Expression Analysis of Agilent microRNA chips BioArchLinuxBot 2024-05-03 19:06 (UTC)
r-pagerank 1.14.0-1 0 0.00 Temporal and Multiplex PageRank for Gene Regulatory Network Analysis BioArchLinuxBot 2024-05-03 19:15 (UTC)
r-esatac 1.26.0-1 0 0.00 An Easy-to-use Systematic pipeline for ATACseq data analysis BioArchLinuxBot 2024-05-03 19:17 (UTC)
splunk 3:9.2.1.0-1 6 0.00 Statistical analysis and search tool for logs and machine data lb.laboon 2024-05-03 20:08 (UTC)

1279 packages found. Page 23 of 26.

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