366 packages found. Page 1 of 8.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-granie 1.8.0-1 0 0.00 Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data pekkarr 2024-05-06 18:12 (UTC)
r-easycelltype 1.6.0-1 0 0.00 Annotate cell types for scRNA-seq data pekkarr 2024-05-06 18:06 (UTC)
r-demuxsnp 1.2.0-1 0 0.00 scRNAseq demultiplexing using cell hashing and SNPs pekkarr 2024-05-06 12:17 (UTC)
r-screpertoire 2.0.0-1 0 0.00 A toolkit for single-cell immune receptor profiling BioArchLinuxBot 2024-05-05 12:20 (UTC)
r-scp 1.14.0-1 0 0.00 Mass Spectrometry-Based Single-Cell Proteomics Data Analysis BioArchLinuxBot 2024-05-05 12:19 (UTC)
r-scrnaseqapp 1.4.0-1 0 0.00 A single-cell RNAseq Shiny app-package pekkarr 2024-05-05 12:17 (UTC)
r-sccomp 1.8.0-1 0 0.00 Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data pekkarr 2024-05-05 12:16 (UTC)
r-scdesign3 1.2.0-1 0 0.00 A unified framework of realistic in silico data generation and statistical model inference for single-cell and spatial omics pekkarr 2024-05-05 12:05 (UTC)
r-singlecelltk 2.14.0-1 0 0.00 Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data BioArchLinuxBot 2024-05-04 18:42 (UTC)
r-scrnaseq 2.18.0-1 0 0.00 Collection of Public Single-Cell RNA-Seq Datasets BioArchLinuxBot 2024-05-04 18:38 (UTC)
r-celldex 1.14.0-1 0 0.00 Index of Reference Cell Type Datasets BioArchLinuxBot 2024-05-04 18:37 (UTC)
util-linux-selinux 2.40-3 17 0.10 SELinux aware miscellaneous system utilities for Linux IooNag 2024-05-04 14:29 (UTC)
r-alabaster.sce 1.4.0-1 0 0.00 Load and Save SingleCellExperiment from File pekkarr 2024-05-04 12:04 (UTC)
r-bandle 1.8.0-1 0 0.00 An R package for the Bayesian analysis of differential subcellular localisation experiments pekkarr 2024-05-04 01:32 (UTC)
r-bcellviper 1.40.0-1 0 0.00 Human B-cell transcriptional interactome and normal human B-cell expression data BioArchLinuxBot 2024-05-04 00:49 (UTC)
r-rcellminerdata 2.26.0-1 0 0.00 Molecular Profiles and Drug Response for the NCI-60 Cell Lines BioArchLinuxBot 2024-05-04 00:48 (UTC)
r-yeastcc 1.44.0-1 0 0.00 Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray data BioArchLinuxBot 2024-05-04 00:41 (UTC)
r-stemhypoxia 1.40.0-1 0 0.00 Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010) BioArchLinuxBot 2024-05-04 00:32 (UTC)
r-hsmmsinglecell 1.24.0-1 0 0.00 Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM) BioArchLinuxBot 2024-05-04 00:25 (UTC)
r-scfeatures 1.4.0-1 0 0.00 Multi-view representations of single-cell and spatial data for disease outcome prediction pekkarr 2024-05-03 18:38 (UTC)
r-scifer 1.6.0-1 0 0.00 Single-Cell Immunoglobulin Filtering of Sanger Sequences pekkarr 2024-05-03 18:30 (UTC)
r-clusterexperiment 2.24.0-1 0 0.00 Compare Clusterings for Single-Cell Sequencing BioArchLinuxBot 2024-05-03 18:21 (UTC)
r-ontoproc 1.26.0-1 0 0.00 processing of ontologies of anatomy, cell lines, and so on BioArchLinuxBot 2024-05-03 18:16 (UTC)
r-methylcc 1.18.0-1 0 0.00 Estimate the cell composition of whole blood in DNA methylation samples BioArchLinuxBot 2024-05-03 15:09 (UTC)
r-sctreeviz 1.10.0-1 0 0.00 R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations BioArchLinuxBot 2024-05-03 14:45 (UTC)
r-dreamlet 1.2.0-1 0 0.00 Scalable differential expression analysis of single cell transcriptomics datasets with complex study designs pekkarr 2024-05-03 14:42 (UTC)
r-sctensor 2.14.0-1 0 0.00 Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition BioArchLinuxBot 2024-05-03 14:38 (UTC)
r-gmicr 1.18.0-1 0 0.00 Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC) BioArchLinuxBot 2024-05-03 14:33 (UTC)
r-flowsorted.blood.450k 1.42.0-1 0 0.00 Illumina HumanMethylation data on sorted blood cell populations BioArchLinuxBot 2024-05-03 14:17 (UTC)
r-demixt 1.20.0-1 0 0.00 Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms BioArchLinuxBot 2024-05-03 13:57 (UTC)
r-scruff 1.22.0-1 0 0.00 Single Cell RNA-Seq UMI Filtering Facilitator (scruff) BioArchLinuxBot 2024-05-03 13:32 (UTC)
r-sctgif 1.18.0-1 0 0.00 Cell type annotation for unannotated single-cell RNA-Seq data BioArchLinuxBot 2024-05-03 12:53 (UTC)
r-slalom 1.26.0-1 0 0.00 Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data BioArchLinuxBot 2024-05-03 12:22 (UTC)
r-aucell 1.26.0-1 0 0.00 AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) BioArchLinuxBot 2024-05-03 12:21 (UTC)
r-velociraptor 1.14.0-1 0 0.00 Toolkit for Single-Cell Velocity BioArchLinuxBot 2024-05-03 09:21 (UTC)
r-scider 1.2.0-1 0 0.00 Spatial cell-type inter-correlation by density in R pekkarr 2024-05-03 09:11 (UTC)
r-hoodscanr 1.2.0-1 0 0.00 Spatial cellular neighbourhood scanning in R pekkarr 2024-05-03 09:08 (UTC)
r-ctsv 1.6.0-1 0 0.00 Identification of cell-type-specific spatially variable genes accounting for excess zeros pekkarr 2024-05-03 09:05 (UTC)
r-statial 1.6.0-1 0 0.00 A package to identify changes in cell state relative to spatial associations pekkarr 2024-05-03 08:57 (UTC)
r-spsimseq 1.14.0-1 0 0.00 Semi-parametric simulation tool for bulk and single-cell RNA sequencing data BioArchLinuxBot 2024-05-03 08:47 (UTC)
r-mistyr 1.12.0-1 0 0.00 Multiview Intercellular SpaTial modeling framework BioArchLinuxBot 2024-05-03 08:42 (UTC)
r-subcellbarcode 1.20.0-1 0 0.00 SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome BioArchLinuxBot 2024-05-03 08:42 (UTC)
r-tricycle 1.12.0-1 0 0.00 tricycle: Transferable Representation and Inference of cell cycle BioArchLinuxBot 2024-05-03 08:39 (UTC)
r-spatialdecon 1.14.0-1 0 0.00 Deconvolution of mixed cells from spatial and/or bulk gene expression data BioArchLinuxBot 2024-05-03 08:38 (UTC)
r-spiky 1.10.0-1 0 0.00 Spike-in calibration for cell-free MeDIP BioArchLinuxBot 2024-05-03 08:19 (UTC)
r-tidysinglecellexperiment 1.14.0-1 0 0.00 Brings SingleCellExperiment to the Tidyverse BioArchLinuxBot 2024-05-03 08:15 (UTC)
r-splatter 1.28.0-1 0 0.00 Simple Simulation of Single-cell RNA Sequencing Data BioArchLinuxBot 2024-05-03 07:48 (UTC)
r-switchde 1.30.0-1 0 0.00 Switch-like differential expression across single-cell trajectories BioArchLinuxBot 2024-05-03 07:43 (UTC)
r-airway 1.24.0-1 0 0.00 RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014 BioArchLinuxBot 2024-05-03 07:33 (UTC)
r-cicero 1.22.0-1 0 0.00 Precict cis-co-accessibility from single-cell chromatin accessibility data BioArchLinuxBot 2024-05-03 06:18 (UTC)

366 packages found. Page 1 of 8.

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