r-granie
|
1.8.0-1 |
0 |
0.00
|
Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data |
pekkarr
|
2024-05-06 18:12 (UTC) |
r-easycelltype
|
1.6.0-1 |
0 |
0.00
|
Annotate cell types for scRNA-seq data |
pekkarr
|
2024-05-06 18:06 (UTC) |
r-demuxsnp
|
1.2.0-1 |
0 |
0.00
|
scRNAseq demultiplexing using cell hashing and SNPs |
pekkarr
|
2024-05-06 12:17 (UTC) |
r-screpertoire
|
2.0.0-1 |
0 |
0.00
|
A toolkit for single-cell immune receptor profiling |
BioArchLinuxBot
|
2024-05-05 12:20 (UTC) |
r-scp
|
1.14.0-1 |
0 |
0.00
|
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis |
BioArchLinuxBot
|
2024-05-05 12:19 (UTC) |
r-scrnaseqapp
|
1.4.0-1 |
0 |
0.00
|
A single-cell RNAseq Shiny app-package |
pekkarr
|
2024-05-05 12:17 (UTC) |
r-sccomp
|
1.8.0-1 |
0 |
0.00
|
Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data |
pekkarr
|
2024-05-05 12:16 (UTC) |
r-scdesign3
|
1.2.0-1 |
0 |
0.00
|
A unified framework of realistic in silico data generation and statistical model inference for single-cell and spatial omics |
pekkarr
|
2024-05-05 12:05 (UTC) |
r-singlecelltk
|
2.14.0-1 |
0 |
0.00
|
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data |
BioArchLinuxBot
|
2024-05-04 18:42 (UTC) |
r-scrnaseq
|
2.18.0-1 |
0 |
0.00
|
Collection of Public Single-Cell RNA-Seq Datasets |
BioArchLinuxBot
|
2024-05-04 18:38 (UTC) |
r-celldex
|
1.14.0-1 |
0 |
0.00
|
Index of Reference Cell Type Datasets |
BioArchLinuxBot
|
2024-05-04 18:37 (UTC) |
util-linux-selinux
|
2.40-3 |
17 |
0.10
|
SELinux aware miscellaneous system utilities for Linux |
IooNag
|
2024-05-04 14:29 (UTC) |
r-alabaster.sce
|
1.4.0-1 |
0 |
0.00
|
Load and Save SingleCellExperiment from File |
pekkarr
|
2024-05-04 12:04 (UTC) |
r-bandle
|
1.8.0-1 |
0 |
0.00
|
An R package for the Bayesian analysis of differential subcellular localisation experiments |
pekkarr
|
2024-05-04 01:32 (UTC) |
r-bcellviper
|
1.40.0-1 |
0 |
0.00
|
Human B-cell transcriptional interactome and normal human B-cell expression data |
BioArchLinuxBot
|
2024-05-04 00:49 (UTC) |
r-rcellminerdata
|
2.26.0-1 |
0 |
0.00
|
Molecular Profiles and Drug Response for the NCI-60 Cell Lines |
BioArchLinuxBot
|
2024-05-04 00:48 (UTC) |
r-yeastcc
|
1.44.0-1 |
0 |
0.00
|
Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray data |
BioArchLinuxBot
|
2024-05-04 00:41 (UTC) |
r-stemhypoxia
|
1.40.0-1 |
0 |
0.00
|
Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010) |
BioArchLinuxBot
|
2024-05-04 00:32 (UTC) |
r-hsmmsinglecell
|
1.24.0-1 |
0 |
0.00
|
Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM) |
BioArchLinuxBot
|
2024-05-04 00:25 (UTC) |
r-scfeatures
|
1.4.0-1 |
0 |
0.00
|
Multi-view representations of single-cell and spatial data for disease outcome prediction |
pekkarr
|
2024-05-03 18:38 (UTC) |
r-scifer
|
1.6.0-1 |
0 |
0.00
|
Single-Cell Immunoglobulin Filtering of Sanger Sequences |
pekkarr
|
2024-05-03 18:30 (UTC) |
r-clusterexperiment
|
2.24.0-1 |
0 |
0.00
|
Compare Clusterings for Single-Cell Sequencing |
BioArchLinuxBot
|
2024-05-03 18:21 (UTC) |
r-ontoproc
|
1.26.0-1 |
0 |
0.00
|
processing of ontologies of anatomy, cell lines, and so on |
BioArchLinuxBot
|
2024-05-03 18:16 (UTC) |
r-methylcc
|
1.18.0-1 |
0 |
0.00
|
Estimate the cell composition of whole blood in DNA methylation samples |
BioArchLinuxBot
|
2024-05-03 15:09 (UTC) |
r-sctreeviz
|
1.10.0-1 |
0 |
0.00
|
R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations |
BioArchLinuxBot
|
2024-05-03 14:45 (UTC) |
r-dreamlet
|
1.2.0-1 |
0 |
0.00
|
Scalable differential expression analysis of single cell transcriptomics datasets with complex study designs |
pekkarr
|
2024-05-03 14:42 (UTC) |
r-sctensor
|
2.14.0-1 |
0 |
0.00
|
Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition |
BioArchLinuxBot
|
2024-05-03 14:38 (UTC) |
r-gmicr
|
1.18.0-1 |
0 |
0.00
|
Combines WGCNA and xCell readouts with bayesian network learrning to generate a Gene-Module Immune-Cell network (GMIC) |
BioArchLinuxBot
|
2024-05-03 14:33 (UTC) |
r-flowsorted.blood.450k
|
1.42.0-1 |
0 |
0.00
|
Illumina HumanMethylation data on sorted blood cell populations |
BioArchLinuxBot
|
2024-05-03 14:17 (UTC) |
r-demixt
|
1.20.0-1 |
0 |
0.00
|
Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms |
BioArchLinuxBot
|
2024-05-03 13:57 (UTC) |
r-scruff
|
1.22.0-1 |
0 |
0.00
|
Single Cell RNA-Seq UMI Filtering Facilitator (scruff) |
BioArchLinuxBot
|
2024-05-03 13:32 (UTC) |
r-sctgif
|
1.18.0-1 |
0 |
0.00
|
Cell type annotation for unannotated single-cell RNA-Seq data |
BioArchLinuxBot
|
2024-05-03 12:53 (UTC) |
r-slalom
|
1.26.0-1 |
0 |
0.00
|
Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data |
BioArchLinuxBot
|
2024-05-03 12:22 (UTC) |
r-aucell
|
1.26.0-1 |
0 |
0.00
|
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) |
BioArchLinuxBot
|
2024-05-03 12:21 (UTC) |
r-velociraptor
|
1.14.0-1 |
0 |
0.00
|
Toolkit for Single-Cell Velocity |
BioArchLinuxBot
|
2024-05-03 09:21 (UTC) |
r-scider
|
1.2.0-1 |
0 |
0.00
|
Spatial cell-type inter-correlation by density in R |
pekkarr
|
2024-05-03 09:11 (UTC) |
r-hoodscanr
|
1.2.0-1 |
0 |
0.00
|
Spatial cellular neighbourhood scanning in R |
pekkarr
|
2024-05-03 09:08 (UTC) |
r-ctsv
|
1.6.0-1 |
0 |
0.00
|
Identification of cell-type-specific spatially variable genes accounting for excess zeros |
pekkarr
|
2024-05-03 09:05 (UTC) |
r-statial
|
1.6.0-1 |
0 |
0.00
|
A package to identify changes in cell state relative to spatial associations |
pekkarr
|
2024-05-03 08:57 (UTC) |
r-spsimseq
|
1.14.0-1 |
0 |
0.00
|
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data |
BioArchLinuxBot
|
2024-05-03 08:47 (UTC) |
r-mistyr
|
1.12.0-1 |
0 |
0.00
|
Multiview Intercellular SpaTial modeling framework |
BioArchLinuxBot
|
2024-05-03 08:42 (UTC) |
r-subcellbarcode
|
1.20.0-1 |
0 |
0.00
|
SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteome |
BioArchLinuxBot
|
2024-05-03 08:42 (UTC) |
r-tricycle
|
1.12.0-1 |
0 |
0.00
|
tricycle: Transferable Representation and Inference of cell cycle |
BioArchLinuxBot
|
2024-05-03 08:39 (UTC) |
r-spatialdecon
|
1.14.0-1 |
0 |
0.00
|
Deconvolution of mixed cells from spatial and/or bulk gene expression data |
BioArchLinuxBot
|
2024-05-03 08:38 (UTC) |
r-spiky
|
1.10.0-1 |
0 |
0.00
|
Spike-in calibration for cell-free MeDIP |
BioArchLinuxBot
|
2024-05-03 08:19 (UTC) |
r-tidysinglecellexperiment
|
1.14.0-1 |
0 |
0.00
|
Brings SingleCellExperiment to the Tidyverse |
BioArchLinuxBot
|
2024-05-03 08:15 (UTC) |
r-splatter
|
1.28.0-1 |
0 |
0.00
|
Simple Simulation of Single-cell RNA Sequencing Data |
BioArchLinuxBot
|
2024-05-03 07:48 (UTC) |
r-switchde
|
1.30.0-1 |
0 |
0.00
|
Switch-like differential expression across single-cell trajectories |
BioArchLinuxBot
|
2024-05-03 07:43 (UTC) |
r-airway
|
1.24.0-1 |
0 |
0.00
|
RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014 |
BioArchLinuxBot
|
2024-05-03 07:33 (UTC) |
r-cicero
|
1.22.0-1 |
0 |
0.00
|
Precict cis-co-accessibility from single-cell chromatin accessibility data |
BioArchLinuxBot
|
2024-05-03 06:18 (UTC) |