146 packages found. Page 1 of 3.

1 2 3 Next › Last »

Name Version Votes Popularity? Description Maintainer Last Updated
r-enmix 1.40.0-1 0 0.00 Quality control and analysis tools for Illumina DNA methylation BeadChip BioArchLinuxBot 2024-05-04 01:18 (UTC)
r-gdnainrnaseqdata 1.4.0-1 0 0.00 RNA-seq data with different levels of gDNA contamination pekkarr 2024-05-04 01:03 (UTC)
r-motifstack 1.48.0-1 0 0.00 Plot stacked logos for single or multiple DNA, RNA and amino acid sequence BioArchLinuxBot 2024-05-03 18:57 (UTC)
r-methylclock 1.10.0-1 0 0.00 Methylclock - DNA methylation-based clocks BioArchLinuxBot 2024-05-03 15:11 (UTC)
r-methylcc 1.18.0-1 0 0.00 Estimate the cell composition of whole blood in DNA methylation samples BioArchLinuxBot 2024-05-03 15:09 (UTC)
r-epimutacions 1.8.0-1 0 0.00 Robust outlier identification for DNA methylation data pekkarr 2024-05-03 14:30 (UTC)
r-conumee 1.38.0-1 0 0.00 Enhanced copy-number variation analysis using Illumina DNA methylation arrays BioArchLinuxBot 2024-05-03 14:29 (UTC)
r-inetgrate 1.2.0-1 0 0.00 Integrates DNA methylation data with gene expression in a single gene network pekkarr 2024-05-03 14:23 (UTC)
r-methylaid 1.38.0-1 0 0.00 Visual and interactive quality control of large Illumina DNA Methylation array data sets BioArchLinuxBot 2024-05-03 14:21 (UTC)
r-recountmethylation 1.14.0-1 0 0.00 Access and analyze DNA methylation database compilations BioArchLinuxBot 2024-05-03 14:20 (UTC)
r-minfi 1.50.0-1 1 0.14 Analyze Illumina Infinium DNA methylation arrays BioArchLinuxBot 2024-05-03 13:03 (UTC)
r-sesame 1.22.0-1 0 0.00 SEnsible Step-wise Analysis of DNA MEthylation BeadChips BioArchLinuxBot 2024-05-03 09:24 (UTC)
r-methylpipe 1.38.0-1 0 0.00 Base resolution DNA methylation data analysis BioArchLinuxBot 2024-05-03 08:35 (UTC)
r-cexor 1.42.0-1 0 0.00 An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates BioArchLinuxBot 2024-05-03 05:18 (UTC)
r-cfdnapro 1.10.0-1 0 0.00 cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy BioArchLinuxBot 2024-05-03 03:33 (UTC)
r-scope 1.16.0-1 0 0.00 A normalization and copy number estimation method for single-cell DNA sequencing BioArchLinuxBot 2024-05-03 03:23 (UTC)
r-medips 1.56.0-1 0 0.00 DNA IP-seq data analysis BioArchLinuxBot 2024-05-03 03:16 (UTC)
r-periodicdna 1.14.0-1 0 0.00 Set of tools to identify periodic occurrences of k-mers in DNA sequences BioArchLinuxBot 2024-05-03 03:08 (UTC)
r-dnafusion 1.6.0-1 0 0.00 Identification of gene fusions using paired-end sequencing pekkarr 2024-05-03 02:54 (UTC)
r-motifdb 1.46.0-1 0 0.00 An Annotated Collection of Protein-DNA Binding Sequence Motifs BioArchLinuxBot 2024-05-03 00:58 (UTC)
r-methylkit 1.30.0-1 0 0.00 DNA methylation analysis from high-throughput bisulfite sequencing results BioArchLinuxBot 2024-05-03 00:57 (UTC)
r-mbpcr 1.58.0-1 0 0.00 Bayesian Piecewise Constant Regression for DNA copy number estimation BioArchLinuxBot 2024-05-02 22:42 (UTC)
r-scmet 1.6.0-1 0 0.00 Bayesian modelling of cell-to-cell DNA methylation heterogeneity pekkarr 2024-05-02 21:48 (UTC)
r-cfdnakit 1.2.0-1 0 0.00 Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA) pekkarr 2024-05-02 21:16 (UTC)
r-rprimer 1.8.0-1 0 0.00 Design Degenerate Oligos from a Multiple DNA Sequence Alignment pekkarr 2024-05-02 18:38 (UTC)
r-methped 1.32.0-1 0 0.00 A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes BioArchLinuxBot 2024-05-02 12:46 (UTC)
r-plasmut 1.2.0-1 0 0.00 Stratifying mutations observed in cell-free DNA and white blood cells as germline, hematopoietic, or somatic pekkarr 2024-05-02 04:52 (UTC)
r-dnabarcodes 1.34.0-1 0 0.00 A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments BioArchLinuxBot 2024-05-02 04:44 (UTC)
r-mbamethyl 1.38.0-1 0 0.00 Model-based analysis of DNA methylation data BioArchLinuxBot 2024-05-02 03:33 (UTC)
r-dnacopy 1.78.0-1 0 0.00 DNA Copy Number Data Analysis BioArchLinuxBot 2024-05-02 03:19 (UTC)
r-seqlogo 1.70.0-1 0 0.00 Sequence logos for DNA sequence alignments BioArchLinuxBot 2024-05-02 03:17 (UTC)
r-qdnaseq 1.40.0-1 0 0.00 Quantitative DNA Sequencing for Chromosomal Aberrations BioArchLinuxBot 2024-05-02 01:59 (UTC)
r-motifcounter 1.28.0-1 0 0.00 R package for analysing TFBSs in DNA sequences BioArchLinuxBot 2024-05-02 00:22 (UTC)
r-dnashaper 1.32.0-1 0 0.00 High-throughput prediction of DNA shape features BioArchLinuxBot 2024-05-02 00:17 (UTC)
r-triplex 1.44.0-1 0 0.00 Search and visualize intramolecular triplex-forming sequences in DNA BioArchLinuxBot 2024-05-02 00:16 (UTC)
r-bcrank 1.66.0-1 0 0.00 Predicting binding site consensus from ranked DNA sequences BioArchLinuxBot 2024-05-02 00:08 (UTC)
r-nnnorm 2.68.0-1 0 0.00 Spatial and intensity based normalization of cDNA microarray data based on robust neural nets BioArchLinuxBot 2024-05-01 22:53 (UTC)
r-stepnorm 1.76.0-1 0 0.00 Stepwise normalization functions for cDNA microarrays BioArchLinuxBot 2024-05-01 22:52 (UTC)
r-alphabeta 1.18.0-1 0 0.00 Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants BioArchLinuxBot 2024-05-01 21:28 (UTC)
r-podcall 1.12.0-1 0 0.00 Positive Droplet Calling for DNA Methylation Droplet Digital PCR BioArchLinuxBot 2024-05-01 21:04 (UTC)
r-frenchfish 1.16.0-1 0 0.00 Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections BioArchLinuxBot 2024-05-01 20:45 (UTC)
r-ledpred 1.38.0-1 0 0.00 Learning from DNA to Predict Enhancers BioArchLinuxBot 2024-05-01 20:28 (UTC)
r-dnabarcodecompatibility 1.20.0-1 0 0.00 A Tool for Optimizing Combinations of DNA Barcodes Used in Multiplexed Experiments on Next Generation Sequencing Platforms BioArchLinuxBot 2024-05-01 20:10 (UTC)
r-planet 1.12.0-1 0 0.00 Placental DNA methylation analysis tools BioArchLinuxBot 2024-05-01 20:06 (UTC)
r-beclear 2.20.0-1 0 0.00 Correction of batch effects in DNA methylation data BioArchLinuxBot 2024-05-01 19:59 (UTC)
r-glad 2.68.0-1 0 0.00 Gain and Loss Analysis of DNA BioArchLinuxBot 2024-05-01 18:38 (UTC)
r-epimix 1.4.0-4 0 0.00 an integrative tool for the population-level analysis of DNA methylation pekkarr 2024-04-27 22:00 (UTC)
r-genomautomorphism 1.4.0-3 0 0.00 Compute the automorphisms between DNA's Abelian group representations pekkarr 2024-04-26 17:53 (UTC)
r-msa2dist 1.6.0-3 0 0.00 MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis pekkarr 2024-04-26 17:52 (UTC)
mednaffe 0.9.3-1 37 1.94 front-end (GUI) for mednafen emulator Vaporeon 2024-04-22 04:08 (UTC)

146 packages found. Page 1 of 3.

1 2 3 Next › Last »