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r-chippeakanno
|
3.38.0-1 |
0 |
0.00
|
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data |
BioArchLinuxBot
|
2024-05-03 12:06 (UTC) |
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r-txdbmaker
|
1.0.0-1 |
0 |
0.00
|
Tools for making TxDb objects from genomic annotations |
pekkarr
|
2024-05-03 10:50 (UTC) |
|
r-gnosis
|
1.2.0-1 |
0 |
0.00
|
Genomics explorer using statistical and survival analysis in R |
pekkarr
|
2024-05-03 09:37 (UTC) |
|
r-compepitools
|
1.38.0-1 |
0 |
0.00
|
Tools for computational epigenomics |
BioArchLinuxBot
|
2024-05-03 09:28 (UTC) |
|
r-bioconcotk
|
1.24.0-1 |
0 |
0.00
|
Bioconductor components for general cancer genomics |
BioArchLinuxBot
|
2024-05-03 09:26 (UTC) |
|
r-regionreport
|
1.38.0-1 |
0 |
0.00
|
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results |
BioArchLinuxBot
|
2024-05-03 09:23 (UTC) |
|
r-srnadiff
|
1.24.0-1 |
0 |
0.00
|
Finding differentially expressed unannotated genomic regions from RNA-seq data |
BioArchLinuxBot
|
2024-05-03 08:36 (UTC) |
|
r-curatedtcgadata
|
1.26.0-1 |
0 |
0.00
|
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects |
BioArchLinuxBot
|
2024-05-03 08:27 (UTC) |
|
r-tenxpbmcdata
|
1.22.0-1 |
0 |
0.00
|
PBMC data from 10X Genomics |
BioArchLinuxBot
|
2024-05-03 08:25 (UTC) |
|
r-epigrahmm
|
1.12.0-1 |
0 |
0.00
|
Epigenomic R-based analysis with hidden Markov models |
BioArchLinuxBot
|
2024-05-03 08:11 (UTC) |
|
r-titancna
|
1.42.0-1 |
0 |
0.00
|
Subclonal copy number and LOH prediction from whole genome sequencing of tumours |
BioArchLinuxBot
|
2024-05-03 08:09 (UTC) |
|
r-snphood
|
1.34.0-1 |
0 |
0.00
|
SNPhood: Investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data |
BioArchLinuxBot
|
2024-05-03 08:08 (UTC) |
|
r-cnvranger
|
1.20.0-1 |
0 |
0.00
|
Summarization and expression/phenotype association of CNV ranges |
BioArchLinuxBot
|
2024-05-03 07:47 (UTC) |
|
r-synmut
|
1.20.0-1 |
0 |
0.00
|
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures |
BioArchLinuxBot
|
2024-05-03 07:31 (UTC) |
|
r-genomicinteractions
|
1.38.0-1 |
0 |
0.00
|
Utilities for handling genomic interaction data |
BioArchLinuxBot
|
2024-05-03 06:06 (UTC) |
|
r-ogre
|
1.8.0-1 |
0 |
0.00
|
Calculate, visualize and analyse overlap between genomic regions |
pekkarr
|
2024-05-03 05:59 (UTC) |
|
r-vtpnet
|
0.44.0-1 |
0 |
0.00
|
variant-transcription factor-phenotype networks |
BioArchLinuxBot
|
2024-05-03 05:52 (UTC) |
|
r-resolve
|
1.6.0-1 |
0 |
0.00
|
An R package for the efficient analysis of mutational signatures from cancer genomes |
pekkarr
|
2024-05-03 05:50 (UTC) |
|
r-karyoploter
|
1.30.0-1 |
0 |
0.00
|
Plot customizable linear genomes displaying arbitrary data |
BioArchLinuxBot
|
2024-05-03 05:41 (UTC) |
|
r-gviz
|
1.48.0-1 |
0 |
0.00
|
Plotting data and annotation information along genomic coordinates |
BioArchLinuxBot
|
2024-05-03 05:40 (UTC) |
|
r-dmrseq
|
1.24.0-1 |
0 |
0.00
|
Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing |
BioArchLinuxBot
|
2024-05-03 05:32 (UTC) |
|
r-profileplyr
|
1.20.0-1 |
0 |
0.00
|
Visualization and annotation of read signal over genomic ranges with profileplyr |
BioArchLinuxBot
|
2024-05-03 05:25 (UTC) |
|
r-rarevariantvis
|
2.32.0-1 |
0 |
0.00
|
A suite for analysis of rare genomic variants in whole genome sequencing data |
BioArchLinuxBot
|
2024-05-03 05:10 (UTC) |
|
r-proteodisco
|
1.10.0-1 |
0 |
0.00
|
Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences |
BioArchLinuxBot
|
2024-05-03 05:02 (UTC) |
|
r-r453plus1toolbox
|
1.54.0-1 |
0 |
0.00
|
A package for importing and analyzing data from Roche's Genome Sequencer System |
BioArchLinuxBot
|
2024-05-03 05:01 (UTC) |
|
r-genvisr
|
1.36.0-1 |
0 |
0.00
|
Genomic Visualizations in R |
BioArchLinuxBot
|
2024-05-03 04:59 (UTC) |
|
r-gwasurvivr
|
1.22.0-1 |
0 |
0.00
|
gwasurvivr: an R package for genome wide survival analysis |
BioArchLinuxBot
|
2024-05-03 04:52 (UTC) |
|
r-mutationalpatterns
|
3.14.0-1 |
0 |
0.00
|
Comprehensive genome-wide analysis of mutational processes |
BioArchLinuxBot
|
2024-05-03 04:51 (UTC) |
|
r-igvr
|
1.24.0-1 |
0 |
0.00
|
igvR: integrative genomics viewer |
BioArchLinuxBot
|
2024-05-03 04:44 (UTC) |
|
r-genomicfiles
|
1.40.0-1 |
0 |
0.00
|
Distributed computing by file or by range |
BioArchLinuxBot
|
2024-05-03 04:41 (UTC) |
|
r-cnvrd2
|
1.42.0-1 |
0 |
0.00
|
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data. |
BioArchLinuxBot
|
2024-05-03 04:38 (UTC) |
|
r-biovizbase
|
1.52.0-1 |
0 |
0.00
|
Basic graphic utilities for visualization of genomic data. |
BioArchLinuxBot
|
2024-05-03 04:35 (UTC) |
|
r-regionereloaded
|
1.6.0-1 |
0 |
0.00
|
Multiple Association for Genomic Region Sets |
pekkarr
|
2024-05-03 04:29 (UTC) |
|
r-annotatr
|
1.30.0-1 |
0 |
0.00
|
Annotation of Genomic Regions to Genomic Annotations |
BioArchLinuxBot
|
2024-05-03 04:26 (UTC) |
|
r-magpie
|
1.4.0-1 |
0 |
0.00
|
MeRIP-Seq data Analysis for Genomic Power Investigation and Evaluation |
pekkarr
|
2024-05-03 04:22 (UTC) |
|
r-decontx
|
1.2.0-1 |
0 |
0.00
|
Decontamination of single cell genomics data |
pekkarr
|
2024-05-03 03:58 (UTC) |
|
r-soggi
|
1.36.0-1 |
0 |
0.00
|
Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic Intervals |
BioArchLinuxBot
|
2024-05-03 03:41 (UTC) |
|
r-rjmcmcnucleosomes
|
1.28.0-1 |
0 |
0.00
|
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq) |
BioArchLinuxBot
|
2024-05-03 03:40 (UTC) |
|
r-methinheritsim
|
1.26.0-1 |
0 |
0.00
|
Simulating Whole-Genome Inherited Bisulphite Sequencing Data |
BioArchLinuxBot
|
2024-05-03 03:37 (UTC) |
|
r-plyinteractions
|
1.2.0-1 |
0 |
0.00
|
Extending tidy verbs to genomic interactions |
pekkarr
|
2024-05-03 03:35 (UTC) |
|
r-cfdnapro
|
1.10.0-1 |
0 |
0.00
|
cfDNAPro Helps Characterise and Visualise Whole Genome Sequencing Data from Liquid Biopsy |
BioArchLinuxBot
|
2024-05-03 03:33 (UTC) |
|
r-plotgardener
|
1.10.0-1 |
0 |
0.00
|
Coordinate-Based Genomic Visualization Package for R |
BioArchLinuxBot
|
2024-05-03 03:31 (UTC) |
|
r-vanillaice
|
1.66.0-1 |
0 |
0.00
|
A Hidden Markov Model for high throughput genotyping arrays |
BioArchLinuxBot
|
2024-05-03 03:30 (UTC) |
|
r-traser
|
1.34.0-1 |
0 |
0.00
|
GWAS trait-associated SNP enrichment analyses in genomic intervals |
BioArchLinuxBot
|
2024-05-03 03:25 (UTC) |
|
r-crisprseek
|
1.44.0-1 |
0 |
0.00
|
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems |
BioArchLinuxBot
|
2024-05-03 03:01 (UTC) |
|
r-genomation
|
1.36.0-1 |
0 |
0.00
|
Summary, annotation and visualization of genomic data |
BioArchLinuxBot
|
2024-05-03 02:59 (UTC) |
|
r-regioner
|
1.36.0-1 |
0 |
0.00
|
Association analysis of genomic regions based on permutation tests |
BioArchLinuxBot
|
2024-05-03 02:56 (UTC) |
|
r-genomicinteractionnodes
|
1.8.0-1 |
0 |
0.00
|
A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR data |
pekkarr
|
2024-05-03 02:50 (UTC) |
|
r-cogito
|
1.10.0-1 |
0 |
0.00
|
Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets |
BioArchLinuxBot
|
2024-05-03 02:44 (UTC) |
|
r-genelendatabase
|
1.39.0-1 |
0 |
0.00
|
Lengths of mRNA transcripts for a number of genomes |
BioArchLinuxBot
|
2024-05-03 02:39 (UTC) |