172 packages found. Page 1 of 4.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-zellkonverter 1.14.1-1 0 0.00 Conversion Between scRNA-seq Objects BioArchLinuxBot 2024-06-27 00:02 (UTC)
r-gsva 1.52.3-1 0 0.00 Gene Set Variation Analysis for Microarray and RNA-Seq Data BioArchLinuxBot 2024-06-12 00:02 (UTC)
r-goseq 1.56.0-1 0 0.00 Gene Ontology analyser for RNA-seq and other length biased data BioArchLinuxBot 2024-06-08 00:03 (UTC)
trinityrnaseq 2.15.1-2 0 0.00 Transcriptome assembler for RNA-seq reads https://doi.org/10.1038%2Fnbt.1883 malacology 2024-06-04 03:42 (UTC)
trinityrnaseq-doc 2.15.1-2 0 0.00 Transcriptome assembler for RNA-seq reads https://doi.org/10.1038%2Fnbt.1883 malacology 2024-06-04 03:42 (UTC)
trinityrnaseq-extra 2.15.1-2 0 0.00 Transcriptome assembler for RNA-seq reads https://doi.org/10.1038%2Fnbt.1883 malacology 2024-06-04 03:42 (UTC)
r-speckle 1.4.0-1 0 0.00 Statistical methods for analysing single cell RNA-seq data pekkarr 2024-05-11 12:18 (UTC)
r-hermes 1.8.0-1 0 0.00 Preprocessing, analyzing, and reporting of RNA-seq data pekkarr 2024-05-10 12:35 (UTC)
r-multirnaflow 1.2.0-1 0 0.00 An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions pekkarr 2024-05-10 12:33 (UTC)
r-clustifyr 1.16.0-1 0 0.00 Classifier for Single-cell RNA-seq Using Cell Clusters BioArchLinuxBot 2024-05-08 18:15 (UTC)
r-degnorm 1.14.0-1 0 0.00 degradation normalization for RNA-seq data BioArchLinuxBot 2024-05-08 18:08 (UTC)
r-proactiv 1.14.0-1 0 0.00 Estimate Promoter Activity from RNA-Seq data BioArchLinuxBot 2024-05-08 18:03 (UTC)
r-phantasuslite 1.2.0-1 0 0.00 Loading and annotation RNA-seq counts matrices pekkarr 2024-05-08 18:03 (UTC)
stringtie 2.2.3-1 0 0.00 A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts malacology 2024-05-08 06:01 (UTC)
r-isomirs 1.32.1-1 0 0.00 Analyze isomiRs and miRNAs from small RNA-seq BioArchLinuxBot 2024-05-07 18:05 (UTC)
r-flames 1.10.0-1 0 0.00 Full Length Analysis of Mutations and Splicing in long read RNA-seq data BioArchLinuxBot 2024-05-07 12:18 (UTC)
r-aspli 2.14.0-1 0 0.00 Analysis of Alternative Splicing Using RNA-Seq BioArchLinuxBot 2024-05-07 12:16 (UTC)
r-metaseqr2 1.16.0-1 0 0.00 An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms BioArchLinuxBot 2024-05-07 12:12 (UTC)
r-customprodb 1.44.0-1 0 0.00 Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search BioArchLinuxBot 2024-05-07 12:08 (UTC)
r-granie 1.8.0-1 0 0.00 Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data pekkarr 2024-05-06 18:12 (UTC)
r-easycelltype 1.6.0-1 0 0.00 Annotate cell types for scRNA-seq data pekkarr 2024-05-06 18:06 (UTC)
r-isoformswitchanalyzer 2.4.0-1 0 0.00 Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data BioArchLinuxBot 2024-05-06 12:06 (UTC)
r-gdnax 1.2.0-1 0 0.00 Diagnostics for assessing genomic DNA contamination in RNA-seq data pekkarr 2024-05-05 18:06 (UTC)
r-singlecelltk 2.14.0-1 0 0.00 Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data BioArchLinuxBot 2024-05-04 18:42 (UTC)
r-scrnaseq 2.18.0-1 0 0.00 Collection of Public Single-Cell RNA-Seq Datasets BioArchLinuxBot 2024-05-04 18:38 (UTC)
r-fraser 2.0.0-1 0 0.00 Find RAre Splicing Events in RNA-Seq Data BioArchLinuxBot 2024-05-04 12:26 (UTC)
r-outrider 1.22.0-1 0 0.00 OUTlier in RNA-Seq fInDER BioArchLinuxBot 2024-05-04 12:16 (UTC)
r-gdnainrnaseqdata 1.4.0-1 0 0.00 RNA-seq data with different levels of gDNA contamination pekkarr 2024-05-04 01:03 (UTC)
r-tweedeseqcountdata 1.42.0-1 0 0.00 RNA-seq count data employed in the vignette of the tweeDEseq package pekkarr 2024-05-04 00:40 (UTC)
r-tximportdata 1.32.0-1 0 0.00 provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project pekkarr 2024-05-04 00:35 (UTC)
r-hsmmsinglecell 1.24.0-1 0 0.00 Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM) BioArchLinuxBot 2024-05-04 00:25 (UTC)
r-easier 1.10.0-1 0 0.00 Estimate Systems Immune Response from RNA-seq data BioArchLinuxBot 2024-05-03 18:53 (UTC)
r-tbsignatureprofiler 1.16.0-1 0 0.00 Profile RNA-Seq Data Using TB Pathway Signatures BioArchLinuxBot 2024-05-03 18:37 (UTC)
r-yarn 1.30.0-1 0 0.00 YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization BioArchLinuxBot 2024-05-03 15:08 (UTC)
r-sctreeviz 1.10.0-1 0 0.00 R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations BioArchLinuxBot 2024-05-03 14:45 (UTC)
r-sctensor 2.14.0-1 0 0.00 Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition BioArchLinuxBot 2024-05-03 14:38 (UTC)
r-pcaexplorer 2.30.0-1 0 0.00 Interactive Visualization of RNA-seq Data Using a Principal Components Approach BioArchLinuxBot 2024-05-03 14:35 (UTC)
r-damirseq 2.16.0-1 0 0.00 Data Mining for RNA-seq data: normalization, feature selection and classification BioArchLinuxBot 2024-05-03 13:54 (UTC)
r-pasilla 1.32.0-1 0 0.00 Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011. BioArchLinuxBot 2024-05-03 13:45 (UTC)
r-scbfa 1.18.0-1 0 0.00 A dimensionality reduction tool using gene detection pattern to mitigate noisy expression profile of scRNA-seq BioArchLinuxBot 2024-05-03 13:39 (UTC)
r-scruff 1.22.0-1 0 0.00 Single Cell RNA-Seq UMI Filtering Facilitator (scruff) BioArchLinuxBot 2024-05-03 13:32 (UTC)
r-dexseq 1.50.0-1 0 0.00 Inference of differential exon usage in RNA-Seq BioArchLinuxBot 2024-05-03 13:01 (UTC)
r-nbamseq 1.20.0-1 0 0.00 Negative Binomial Additive Model for RNA-Seq Data BioArchLinuxBot 2024-05-03 13:00 (UTC)
r-zinbwave 1.26.0-1 0 0.00 Zero-Inflated Negative Binomial Model for RNA-Seq Data BioArchLinuxBot 2024-05-03 12:56 (UTC)
r-sctgif 1.18.0-1 0 0.00 Cell type annotation for unannotated single-cell RNA-Seq data BioArchLinuxBot 2024-05-03 12:53 (UTC)
r-slalom 1.26.0-1 0 0.00 Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data BioArchLinuxBot 2024-05-03 12:22 (UTC)
r-aucell 1.26.0-1 0 0.00 AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) BioArchLinuxBot 2024-05-03 12:21 (UTC)
r-mgfr 1.30.0-1 0 0.00 Marker Gene Finder in RNA-seq data BioArchLinuxBot 2024-05-03 12:09 (UTC)
r-srnadiff 1.24.0-1 0 0.00 Finding differentially expressed unannotated genomic regions from RNA-seq data BioArchLinuxBot 2024-05-03 08:36 (UTC)
r-derfinder 1.38.0-1 0 0.00 Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach BioArchLinuxBot 2024-05-03 08:18 (UTC)

172 packages found. Page 1 of 4.

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