r-zellkonverter
|
1.14.1-1 |
0 |
0.00
|
Conversion Between scRNA-seq Objects |
BioArchLinuxBot
|
2024-06-27 00:02 (UTC) |
r-gsva
|
1.52.3-1 |
0 |
0.00
|
Gene Set Variation Analysis for Microarray and RNA-Seq Data |
BioArchLinuxBot
|
2024-06-12 00:02 (UTC) |
r-goseq
|
1.56.0-1 |
0 |
0.00
|
Gene Ontology analyser for RNA-seq and other length biased data |
BioArchLinuxBot
|
2024-06-08 00:03 (UTC) |
trinityrnaseq
|
2.15.1-2 |
0 |
0.00
|
Transcriptome assembler for RNA-seq reads https://doi.org/10.1038%2Fnbt.1883 |
malacology
|
2024-06-04 03:42 (UTC) |
trinityrnaseq-doc
|
2.15.1-2 |
0 |
0.00
|
Transcriptome assembler for RNA-seq reads https://doi.org/10.1038%2Fnbt.1883 |
malacology
|
2024-06-04 03:42 (UTC) |
trinityrnaseq-extra
|
2.15.1-2 |
0 |
0.00
|
Transcriptome assembler for RNA-seq reads https://doi.org/10.1038%2Fnbt.1883 |
malacology
|
2024-06-04 03:42 (UTC) |
r-speckle
|
1.4.0-1 |
0 |
0.00
|
Statistical methods for analysing single cell RNA-seq data |
pekkarr
|
2024-05-11 12:18 (UTC) |
r-hermes
|
1.8.0-1 |
0 |
0.00
|
Preprocessing, analyzing, and reporting of RNA-seq data |
pekkarr
|
2024-05-10 12:35 (UTC) |
r-multirnaflow
|
1.2.0-1 |
0 |
0.00
|
An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions |
pekkarr
|
2024-05-10 12:33 (UTC) |
r-clustifyr
|
1.16.0-1 |
0 |
0.00
|
Classifier for Single-cell RNA-seq Using Cell Clusters |
BioArchLinuxBot
|
2024-05-08 18:15 (UTC) |
r-degnorm
|
1.14.0-1 |
0 |
0.00
|
degradation normalization for RNA-seq data |
BioArchLinuxBot
|
2024-05-08 18:08 (UTC) |
r-proactiv
|
1.14.0-1 |
0 |
0.00
|
Estimate Promoter Activity from RNA-Seq data |
BioArchLinuxBot
|
2024-05-08 18:03 (UTC) |
r-phantasuslite
|
1.2.0-1 |
0 |
0.00
|
Loading and annotation RNA-seq counts matrices |
pekkarr
|
2024-05-08 18:03 (UTC) |
stringtie
|
2.2.3-1 |
0 |
0.00
|
A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts |
malacology
|
2024-05-08 06:01 (UTC) |
r-isomirs
|
1.32.1-1 |
0 |
0.00
|
Analyze isomiRs and miRNAs from small RNA-seq |
BioArchLinuxBot
|
2024-05-07 18:05 (UTC) |
r-flames
|
1.10.0-1 |
0 |
0.00
|
Full Length Analysis of Mutations and Splicing in long read RNA-seq data |
BioArchLinuxBot
|
2024-05-07 12:18 (UTC) |
r-aspli
|
2.14.0-1 |
0 |
0.00
|
Analysis of Alternative Splicing Using RNA-Seq |
BioArchLinuxBot
|
2024-05-07 12:16 (UTC) |
r-metaseqr2
|
1.16.0-1 |
0 |
0.00
|
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms |
BioArchLinuxBot
|
2024-05-07 12:12 (UTC) |
r-customprodb
|
1.44.0-1 |
0 |
0.00
|
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search |
BioArchLinuxBot
|
2024-05-07 12:08 (UTC) |
r-granie
|
1.8.0-1 |
0 |
0.00
|
Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data |
pekkarr
|
2024-05-06 18:12 (UTC) |
r-easycelltype
|
1.6.0-1 |
0 |
0.00
|
Annotate cell types for scRNA-seq data |
pekkarr
|
2024-05-06 18:06 (UTC) |
r-isoformswitchanalyzer
|
2.4.0-1 |
0 |
0.00
|
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data |
BioArchLinuxBot
|
2024-05-06 12:06 (UTC) |
r-gdnax
|
1.2.0-1 |
0 |
0.00
|
Diagnostics for assessing genomic DNA contamination in RNA-seq data |
pekkarr
|
2024-05-05 18:06 (UTC) |
r-singlecelltk
|
2.14.0-1 |
0 |
0.00
|
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data |
BioArchLinuxBot
|
2024-05-04 18:42 (UTC) |
r-scrnaseq
|
2.18.0-1 |
0 |
0.00
|
Collection of Public Single-Cell RNA-Seq Datasets |
BioArchLinuxBot
|
2024-05-04 18:38 (UTC) |
r-fraser
|
2.0.0-1 |
0 |
0.00
|
Find RAre Splicing Events in RNA-Seq Data |
BioArchLinuxBot
|
2024-05-04 12:26 (UTC) |
r-outrider
|
1.22.0-1 |
0 |
0.00
|
OUTlier in RNA-Seq fInDER |
BioArchLinuxBot
|
2024-05-04 12:16 (UTC) |
r-gdnainrnaseqdata
|
1.4.0-1 |
0 |
0.00
|
RNA-seq data with different levels of gDNA contamination |
pekkarr
|
2024-05-04 01:03 (UTC) |
r-tweedeseqcountdata
|
1.42.0-1 |
0 |
0.00
|
RNA-seq count data employed in the vignette of the tweeDEseq package |
pekkarr
|
2024-05-04 00:40 (UTC) |
r-tximportdata
|
1.32.0-1 |
0 |
0.00
|
provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project |
pekkarr
|
2024-05-04 00:35 (UTC) |
r-hsmmsinglecell
|
1.24.0-1 |
0 |
0.00
|
Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM) |
BioArchLinuxBot
|
2024-05-04 00:25 (UTC) |
r-easier
|
1.10.0-1 |
0 |
0.00
|
Estimate Systems Immune Response from RNA-seq data |
BioArchLinuxBot
|
2024-05-03 18:53 (UTC) |
r-tbsignatureprofiler
|
1.16.0-1 |
0 |
0.00
|
Profile RNA-Seq Data Using TB Pathway Signatures |
BioArchLinuxBot
|
2024-05-03 18:37 (UTC) |
r-yarn
|
1.30.0-1 |
0 |
0.00
|
YARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization |
BioArchLinuxBot
|
2024-05-03 15:08 (UTC) |
r-sctreeviz
|
1.10.0-1 |
0 |
0.00
|
R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations |
BioArchLinuxBot
|
2024-05-03 14:45 (UTC) |
r-sctensor
|
2.14.0-1 |
0 |
0.00
|
Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition |
BioArchLinuxBot
|
2024-05-03 14:38 (UTC) |
r-pcaexplorer
|
2.30.0-1 |
0 |
0.00
|
Interactive Visualization of RNA-seq Data Using a Principal Components Approach |
BioArchLinuxBot
|
2024-05-03 14:35 (UTC) |
r-damirseq
|
2.16.0-1 |
0 |
0.00
|
Data Mining for RNA-seq data: normalization, feature selection and classification |
BioArchLinuxBot
|
2024-05-03 13:54 (UTC) |
r-pasilla
|
1.32.0-1 |
0 |
0.00
|
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011. |
BioArchLinuxBot
|
2024-05-03 13:45 (UTC) |
r-scbfa
|
1.18.0-1 |
0 |
0.00
|
A dimensionality reduction tool using gene detection pattern to mitigate noisy expression profile of scRNA-seq |
BioArchLinuxBot
|
2024-05-03 13:39 (UTC) |
r-scruff
|
1.22.0-1 |
0 |
0.00
|
Single Cell RNA-Seq UMI Filtering Facilitator (scruff) |
BioArchLinuxBot
|
2024-05-03 13:32 (UTC) |
r-dexseq
|
1.50.0-1 |
0 |
0.00
|
Inference of differential exon usage in RNA-Seq |
BioArchLinuxBot
|
2024-05-03 13:01 (UTC) |
r-nbamseq
|
1.20.0-1 |
0 |
0.00
|
Negative Binomial Additive Model for RNA-Seq Data |
BioArchLinuxBot
|
2024-05-03 13:00 (UTC) |
r-zinbwave
|
1.26.0-1 |
0 |
0.00
|
Zero-Inflated Negative Binomial Model for RNA-Seq Data |
BioArchLinuxBot
|
2024-05-03 12:56 (UTC) |
r-sctgif
|
1.18.0-1 |
0 |
0.00
|
Cell type annotation for unannotated single-cell RNA-Seq data |
BioArchLinuxBot
|
2024-05-03 12:53 (UTC) |
r-slalom
|
1.26.0-1 |
0 |
0.00
|
Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data |
BioArchLinuxBot
|
2024-05-03 12:22 (UTC) |
r-aucell
|
1.26.0-1 |
0 |
0.00
|
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures) |
BioArchLinuxBot
|
2024-05-03 12:21 (UTC) |
r-mgfr
|
1.30.0-1 |
0 |
0.00
|
Marker Gene Finder in RNA-seq data |
BioArchLinuxBot
|
2024-05-03 12:09 (UTC) |
r-srnadiff
|
1.24.0-1 |
0 |
0.00
|
Finding differentially expressed unannotated genomic regions from RNA-seq data |
BioArchLinuxBot
|
2024-05-03 08:36 (UTC) |
r-derfinder
|
1.38.0-1 |
0 |
0.00
|
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach |
BioArchLinuxBot
|
2024-05-03 08:18 (UTC) |