r-isomirs
|
1.32.1-1 |
0 |
0.00
|
Analyze isomiRs and miRNAs from small RNA-seq |
BioArchLinuxBot
|
2024-05-07 18:05 (UTC) |
r-isoformswitchanalyzer
|
2.4.0-1 |
0 |
0.00
|
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data |
BioArchLinuxBot
|
2024-05-06 12:06 (UTC) |
r-irisfgm
|
1.8.0-2 |
0 |
0.00
|
Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq |
BioArchLinuxBot
|
2024-02-11 12:07 (UTC) |
r-inspect
|
1.34.0-1 |
0 |
0.00
|
Modeling RNA synthesis, processing and degradation with RNA-seq data |
BioArchLinuxBot
|
2024-05-03 02:47 (UTC) |
r-inpas
|
2.12.0-1 |
0 |
0.00
|
A Bioconductor package for identifying novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data |
BioArchLinuxBot
|
2024-05-03 05:21 (UTC) |
r-infercnv
|
1.20.0-1 |
0 |
0.00
|
Infer Copy Number Variation from Single-Cell RNA-Seq Data |
BioArchLinuxBot
|
2024-05-02 23:54 (UTC) |
r-iloreg
|
1.14.0-1 |
0 |
0.00
|
a tool for high-resolution cell population identification from scRNA-Seq data |
BioArchLinuxBot
|
2024-05-02 22:03 (UTC) |
r-hsmmsinglecell
|
1.24.0-1 |
0 |
0.00
|
Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM) |
BioArchLinuxBot
|
2024-05-04 00:25 (UTC) |
r-hermes
|
1.8.0-1 |
0 |
0.00
|
Preprocessing, analyzing, and reporting of RNA-seq data |
pekkarr
|
2024-05-10 12:35 (UTC) |
r-gsva
|
1.52.3-1 |
0 |
0.00
|
Gene Set Variation Analysis for Microarray and RNA-Seq Data |
BioArchLinuxBot
|
2024-06-12 00:02 (UTC) |
r-granulator
|
1.12.0-1 |
0 |
0.00
|
Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data |
BioArchLinuxBot
|
2024-05-01 21:50 (UTC) |
r-granie
|
1.8.0-1 |
0 |
0.00
|
Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data |
pekkarr
|
2024-05-06 18:12 (UTC) |
r-goseq
|
1.56.0-1 |
0 |
0.00
|
Gene Ontology analyser for RNA-seq and other length biased data |
BioArchLinuxBot
|
2024-06-08 00:03 (UTC) |
r-gloscope
|
1.2.0-1 |
0 |
0.00
|
Population-level Representation on scRNA-Seq data |
pekkarr
|
2024-05-02 22:02 (UTC) |
r-genomicsupersignature
|
1.12.0-1 |
0 |
0.00
|
Interpretation of RNA-seq experiments through robust, efficient comparison to public databases |
BioArchLinuxBot
|
2024-05-02 20:26 (UTC) |
r-genomicinstability
|
1.10.0-1 |
0 |
0.00
|
Genomic Instability estimation for scRNA-Seq |
BioArchLinuxBot
|
2024-05-02 19:36 (UTC) |
r-gdnax
|
1.2.0-1 |
0 |
0.00
|
Diagnostics for assessing genomic DNA contamination in RNA-seq data |
pekkarr
|
2024-05-05 18:06 (UTC) |
r-gdnainrnaseqdata
|
1.4.0-1 |
0 |
0.00
|
RNA-seq data with different levels of gDNA contamination |
pekkarr
|
2024-05-04 01:03 (UTC) |
r-fraser
|
2.0.0-1 |
0 |
0.00
|
Find RAre Splicing Events in RNA-Seq Data |
BioArchLinuxBot
|
2024-05-04 12:26 (UTC) |
r-flames
|
1.10.0-1 |
0 |
0.00
|
Full Length Analysis of Mutations and Splicing in long read RNA-seq data |
BioArchLinuxBot
|
2024-05-07 12:18 (UTC) |
r-fission
|
1.24.0-1 |
0 |
0.00
|
RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014. |
BioArchLinuxBot
|
2024-05-03 07:35 (UTC) |
r-excluster
|
1.22.0-1 |
0 |
0.00
|
ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition |
BioArchLinuxBot
|
2024-05-03 00:59 (UTC) |
r-eventpointer
|
3.12.0-1 |
0 |
0.00
|
An effective identification of alternative splicing events using junction arrays and RNA-Seq data |
BioArchLinuxBot
|
2024-05-03 04:20 (UTC) |
r-erssa
|
1.22.0-1 |
0 |
0.00
|
Empirical RNA-seq Sample Size Analysis |
BioArchLinuxBot
|
2024-05-02 22:21 (UTC) |
r-edaseq
|
2.38.0-1 |
0 |
0.00
|
Exploratory Data Analysis and Normalization for RNA-Seq |
BioArchLinuxBot
|
2024-05-03 02:23 (UTC) |
r-ebseqhmm
|
1.35.0-1 |
0 |
0.00
|
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments |
BioArchLinuxBot
|
2023-10-26 06:46 (UTC) |
r-ebseq
|
2.2.0-1 |
0 |
0.00
|
An R package for gene and isoform differential expression analysis of RNA-seq data |
BioArchLinuxBot
|
2024-05-02 04:46 (UTC) |
r-easyrnaseq
|
2.38.0-1 |
0 |
0.00
|
Count summarization and normalization for RNA-Seq data |
BioArchLinuxBot
|
2023-10-27 09:50 (UTC) |
r-easycelltype
|
1.6.0-1 |
0 |
0.00
|
Annotate cell types for scRNA-seq data |
pekkarr
|
2024-05-06 18:06 (UTC) |
r-easier
|
1.10.0-1 |
0 |
0.00
|
Estimate Systems Immune Response from RNA-seq data |
BioArchLinuxBot
|
2024-05-03 18:53 (UTC) |
r-dupradar
|
1.34.0-1 |
0 |
0.00
|
Assessment of duplication rates in RNA-Seq datasets |
BioArchLinuxBot
|
2024-05-02 05:14 (UTC) |
r-dune
|
1.16.0-1 |
0 |
0.00
|
Improving replicability in single-cell RNA-Seq cell type discovery |
BioArchLinuxBot
|
2024-05-02 19:38 (UTC) |
r-drimseq
|
1.32.0-1 |
0 |
0.00
|
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq |
BioArchLinuxBot
|
2024-05-01 22:25 (UTC) |
r-drimpute
|
1.0-4 |
0 |
0.00
|
Imputing Dropout Events in Single-Cell RNA-Sequencing Data |
BioArchLinuxBot
|
2022-06-06 00:34 (UTC) |
r-differentialregulation
|
2.2.0-1 |
0 |
0.00
|
Differentially regulated genes from scRNA-seq data |
pekkarr
|
2024-05-02 21:45 (UTC) |
r-dexseq
|
1.50.0-1 |
0 |
0.00
|
Inference of differential exon usage in RNA-Seq |
BioArchLinuxBot
|
2024-05-03 13:01 (UTC) |
r-desubs
|
1.30.0-1 |
0 |
0.00
|
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments |
BioArchLinuxBot
|
2024-05-02 22:13 (UTC) |
r-desingle
|
1.24.0-1 |
0 |
0.00
|
DEsingle for detecting three types of differential expression in single-cell RNA-seq data |
BioArchLinuxBot
|
2024-05-01 19:48 (UTC) |
r-derfinder
|
1.38.0-1 |
0 |
0.00
|
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach |
BioArchLinuxBot
|
2024-05-03 08:18 (UTC) |
r-demuxmix
|
1.6.0-1 |
0 |
0.00
|
Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models |
pekkarr
|
2024-05-02 04:53 (UTC) |
r-degseq
|
1.58.0-1 |
0 |
0.00
|
Identify Differentially Expressed Genes from RNA-seq data |
BioArchLinuxBot
|
2024-05-01 23:24 (UTC) |
r-degnorm
|
1.14.0-1 |
0 |
0.00
|
degradation normalization for RNA-seq data |
BioArchLinuxBot
|
2024-05-08 18:08 (UTC) |
r-deconrnaseq
|
1.46.0-1 |
0 |
0.00
|
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data |
BioArchLinuxBot
|
2024-05-01 22:46 (UTC) |
r-dearseq
|
1.16.0-1 |
0 |
0.00
|
Differential Expression Analysis for RNA-seq data through a robust variance component test |
BioArchLinuxBot
|
2024-05-01 20:37 (UTC) |
r-dasper
|
1.9.0-3 |
0 |
0.00
|
Detecting abberant splicing events from RNA-sequencing data |
BioArchLinuxBot
|
2024-04-27 20:34 (UTC) |
r-damirseq
|
2.16.0-1 |
0 |
0.00
|
Data Mining for RNA-seq data: normalization, feature selection and classification |
BioArchLinuxBot
|
2024-05-03 13:54 (UTC) |
r-customprodb
|
1.44.0-1 |
0 |
0.00
|
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search |
BioArchLinuxBot
|
2024-05-07 12:08 (UTC) |
r-countclust
|
1.23.1-4 |
0 |
0.00
|
Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models |
BioArchLinuxBot
|
2022-11-04 06:07 (UTC) |
r-consensusde
|
1.22.0-1 |
0 |
0.00
|
RNA-seq analysis using multiple algorithms |
BioArchLinuxBot
|
2024-05-03 05:29 (UTC) |
r-conclus
|
1.5.0-4 |
0 |
0.00
|
ScRNA-seq Workflow CONCLUS - From CONsensus CLUSters To A Meaningful CONCLUSion |
BioArchLinuxBot
|
2023-04-29 07:00 (UTC) |