172 packages found. Page 3 of 4.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-isomirs 1.32.1-1 0 0.00 Analyze isomiRs and miRNAs from small RNA-seq BioArchLinuxBot 2024-05-07 18:05 (UTC)
r-isoformswitchanalyzer 2.4.0-1 0 0.00 Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data BioArchLinuxBot 2024-05-06 12:06 (UTC)
r-irisfgm 1.8.0-2 0 0.00 Comprehensive Analysis of Gene Interactivity Networks Based on Single-Cell RNA-Seq BioArchLinuxBot 2024-02-11 12:07 (UTC)
r-inspect 1.34.0-1 0 0.00 Modeling RNA synthesis, processing and degradation with RNA-seq data BioArchLinuxBot 2024-05-03 02:47 (UTC)
r-inpas 2.12.0-1 0 0.00 A Bioconductor package for identifying novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data BioArchLinuxBot 2024-05-03 05:21 (UTC)
r-infercnv 1.20.0-1 0 0.00 Infer Copy Number Variation from Single-Cell RNA-Seq Data BioArchLinuxBot 2024-05-02 23:54 (UTC)
r-iloreg 1.14.0-1 0 0.00 a tool for high-resolution cell population identification from scRNA-Seq data BioArchLinuxBot 2024-05-02 22:03 (UTC)
r-hsmmsinglecell 1.24.0-1 0 0.00 Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM) BioArchLinuxBot 2024-05-04 00:25 (UTC)
r-hermes 1.8.0-1 0 0.00 Preprocessing, analyzing, and reporting of RNA-seq data pekkarr 2024-05-10 12:35 (UTC)
r-gsva 1.52.3-1 0 0.00 Gene Set Variation Analysis for Microarray and RNA-Seq Data BioArchLinuxBot 2024-06-12 00:02 (UTC)
r-granulator 1.12.0-1 0 0.00 Rapid benchmarking of methods for *in silico* deconvolution of bulk RNA-seq data BioArchLinuxBot 2024-05-01 21:50 (UTC)
r-granie 1.8.0-1 0 0.00 Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data pekkarr 2024-05-06 18:12 (UTC)
r-goseq 1.56.0-1 0 0.00 Gene Ontology analyser for RNA-seq and other length biased data BioArchLinuxBot 2024-06-08 00:03 (UTC)
r-gloscope 1.2.0-1 0 0.00 Population-level Representation on scRNA-Seq data pekkarr 2024-05-02 22:02 (UTC)
r-genomicsupersignature 1.12.0-1 0 0.00 Interpretation of RNA-seq experiments through robust, efficient comparison to public databases BioArchLinuxBot 2024-05-02 20:26 (UTC)
r-genomicinstability 1.10.0-1 0 0.00 Genomic Instability estimation for scRNA-Seq BioArchLinuxBot 2024-05-02 19:36 (UTC)
r-gdnax 1.2.0-1 0 0.00 Diagnostics for assessing genomic DNA contamination in RNA-seq data pekkarr 2024-05-05 18:06 (UTC)
r-gdnainrnaseqdata 1.4.0-1 0 0.00 RNA-seq data with different levels of gDNA contamination pekkarr 2024-05-04 01:03 (UTC)
r-fraser 2.0.0-1 0 0.00 Find RAre Splicing Events in RNA-Seq Data BioArchLinuxBot 2024-05-04 12:26 (UTC)
r-flames 1.10.0-1 0 0.00 Full Length Analysis of Mutations and Splicing in long read RNA-seq data BioArchLinuxBot 2024-05-07 12:18 (UTC)
r-fission 1.24.0-1 0 0.00 RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014. BioArchLinuxBot 2024-05-03 07:35 (UTC)
r-excluster 1.22.0-1 0 0.00 ExCluster robustly detects differentially expressed exons between two conditions of RNA-seq data, requiring at least two independent biological replicates per condition BioArchLinuxBot 2024-05-03 00:59 (UTC)
r-eventpointer 3.12.0-1 0 0.00 An effective identification of alternative splicing events using junction arrays and RNA-Seq data BioArchLinuxBot 2024-05-03 04:20 (UTC)
r-erssa 1.22.0-1 0 0.00 Empirical RNA-seq Sample Size Analysis BioArchLinuxBot 2024-05-02 22:21 (UTC)
r-edaseq 2.38.0-1 0 0.00 Exploratory Data Analysis and Normalization for RNA-Seq BioArchLinuxBot 2024-05-03 02:23 (UTC)
r-ebseqhmm 1.35.0-1 0 0.00 Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments BioArchLinuxBot 2023-10-26 06:46 (UTC)
r-ebseq 2.2.0-1 0 0.00 An R package for gene and isoform differential expression analysis of RNA-seq data BioArchLinuxBot 2024-05-02 04:46 (UTC)
r-easyrnaseq 2.38.0-1 0 0.00 Count summarization and normalization for RNA-Seq data BioArchLinuxBot 2023-10-27 09:50 (UTC)
r-easycelltype 1.6.0-1 0 0.00 Annotate cell types for scRNA-seq data pekkarr 2024-05-06 18:06 (UTC)
r-easier 1.10.0-1 0 0.00 Estimate Systems Immune Response from RNA-seq data BioArchLinuxBot 2024-05-03 18:53 (UTC)
r-dupradar 1.34.0-1 0 0.00 Assessment of duplication rates in RNA-Seq datasets BioArchLinuxBot 2024-05-02 05:14 (UTC)
r-dune 1.16.0-1 0 0.00 Improving replicability in single-cell RNA-Seq cell type discovery BioArchLinuxBot 2024-05-02 19:38 (UTC)
r-drimseq 1.32.0-1 0 0.00 Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq BioArchLinuxBot 2024-05-01 22:25 (UTC)
r-drimpute 1.0-4 0 0.00 Imputing Dropout Events in Single-Cell RNA-Sequencing Data BioArchLinuxBot 2022-06-06 00:34 (UTC)
r-differentialregulation 2.2.0-1 0 0.00 Differentially regulated genes from scRNA-seq data pekkarr 2024-05-02 21:45 (UTC)
r-dexseq 1.50.0-1 0 0.00 Inference of differential exon usage in RNA-Seq BioArchLinuxBot 2024-05-03 13:01 (UTC)
r-desubs 1.30.0-1 0 0.00 DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments BioArchLinuxBot 2024-05-02 22:13 (UTC)
r-desingle 1.24.0-1 0 0.00 DEsingle for detecting three types of differential expression in single-cell RNA-seq data BioArchLinuxBot 2024-05-01 19:48 (UTC)
r-derfinder 1.38.0-1 0 0.00 Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach BioArchLinuxBot 2024-05-03 08:18 (UTC)
r-demuxmix 1.6.0-1 0 0.00 Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models pekkarr 2024-05-02 04:53 (UTC)
r-degseq 1.58.0-1 0 0.00 Identify Differentially Expressed Genes from RNA-seq data BioArchLinuxBot 2024-05-01 23:24 (UTC)
r-degnorm 1.14.0-1 0 0.00 degradation normalization for RNA-seq data BioArchLinuxBot 2024-05-08 18:08 (UTC)
r-deconrnaseq 1.46.0-1 0 0.00 Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data BioArchLinuxBot 2024-05-01 22:46 (UTC)
r-dearseq 1.16.0-1 0 0.00 Differential Expression Analysis for RNA-seq data through a robust variance component test BioArchLinuxBot 2024-05-01 20:37 (UTC)
r-dasper 1.9.0-3 0 0.00 Detecting abberant splicing events from RNA-sequencing data BioArchLinuxBot 2024-04-27 20:34 (UTC)
r-damirseq 2.16.0-1 0 0.00 Data Mining for RNA-seq data: normalization, feature selection and classification BioArchLinuxBot 2024-05-03 13:54 (UTC)
r-customprodb 1.44.0-1 0 0.00 Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search BioArchLinuxBot 2024-05-07 12:08 (UTC)
r-countclust 1.23.1-4 0 0.00 Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models BioArchLinuxBot 2022-11-04 06:07 (UTC)
r-consensusde 1.22.0-1 0 0.00 RNA-seq analysis using multiple algorithms BioArchLinuxBot 2024-05-03 05:29 (UTC)
r-conclus 1.5.0-4 0 0.00 ScRNA-seq Workflow CONCLUS - From CONsensus CLUSters To A Meaningful CONCLUSion BioArchLinuxBot 2023-04-29 07:00 (UTC)

172 packages found. Page 3 of 4.

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