608 packages found. Page 1 of 13.

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Name Version Votes Popularity? Description Maintainer Last Updated
r-tximportdata 1.32.0-1 0 0.00 provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project pekkarr 2024-05-04 00:35 (UTC)
nextcloud-app-oidc-login 3.1.0-1 1 0.00 App for authenticating Nextcloud users using SAML alerque 2024-05-03 20:14 (UTC)
convertwithmoss 9.0.1-1 0 0.00 A tool for converting multi-samples from one format to another redtide 2024-05-03 19:05 (UTC)
r-methylcc 1.18.0-1 0 0.00 Estimate the cell composition of whole blood in DNA methylation samples BioArchLinuxBot 2024-05-03 15:09 (UTC)
r-demixt 1.20.0-1 0 0.00 Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms BioArchLinuxBot 2024-05-03 13:57 (UTC)
r-doppelgangr 1.32.0-1 0 0.00 Identify likely duplicate samples from genomic or meta-data BioArchLinuxBot 2024-05-03 13:52 (UTC)
r-pasilla 1.32.0-1 0 0.00 Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011. BioArchLinuxBot 2024-05-03 13:45 (UTC)
r-sampleclassifier 1.28.0-1 0 0.00 Sample Classifier BioArchLinuxBot 2024-05-03 12:55 (UTC)
r-singscore 1.24.0-1 0 0.00 Rank-based single-sample gene set scoring method BioArchLinuxBot 2024-05-03 12:19 (UTC)
r-sesame 1.22.0-1 0 0.00 SEnsible Step-wise Analysis of DNA MEthylation BeadChips BioArchLinuxBot 2024-05-03 09:24 (UTC)
r-omicspca 1.22.0-1 0 0.00 An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples BioArchLinuxBot 2024-05-03 08:51 (UTC)
r-sesamedata 1.22.0-1 0 0.00 Supporting Data for SeSAMe Package BioArchLinuxBot 2024-05-03 08:24 (UTC)
r-sspaths 1.18.0-1 0 0.00 ssPATHS: Single Sample PATHway Score BioArchLinuxBot 2024-05-03 07:58 (UTC)
r-subseq 1.34.0-1 0 0.00 Subsampling of high-throughput sequencing count data BioArchLinuxBot 2024-05-03 07:40 (UTC)
r-systempiperdata 2.8.0-1 0 0.00 systemPipeRdata: Workflow templates and sample data BioArchLinuxBot 2024-05-03 07:30 (UTC)
r-rnaseqsamplesizedata 1.36.0-1 0 0.00 RnaSeqSampleSizeData BioArchLinuxBot 2024-05-03 07:01 (UTC)
r-lineagespot 1.8.0-1 0 0.00 Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing pekkarr 2024-05-03 05:16 (UTC)
r-sigspack 1.18.0-1 0 0.00 Mutational Signature Estimation for Single Samples BioArchLinuxBot 2024-05-03 05:15 (UTC)
r-muscat 1.18.0-1 0 0.00 Multi-sample multi-group scRNA-seq data analysis tools BioArchLinuxBot 2024-05-03 01:47 (UTC)
r-vaexprs 1.10.0-1 0 0.00 Generating Samples of Gene Expression Data with Variational Autoencoders BioArchLinuxBot 2024-05-03 01:45 (UTC)
r-rmspc 1.10.0-1 0 0.00 Multiple Sample Peak Calling BioArchLinuxBot 2024-05-03 01:06 (UTC)
r-powsc 1.12.0-1 0 0.00 Simulation, power evaluation, and sample size recommendation for single cell RNA-seq BioArchLinuxBot 2024-05-03 00:15 (UTC)
r-mosaics 2.42.0-1 0 0.00 MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq) BioArchLinuxBot 2024-05-02 23:44 (UTC)
r-netsam 1.44.0-1 0 0.00 Network Seriation And Modularization BioArchLinuxBot 2024-05-02 23:15 (UTC)
r-erssa 1.22.0-1 0 0.00 Empirical RNA-seq Sample Size Analysis BioArchLinuxBot 2024-05-02 22:21 (UTC)
r-ssnappy 1.8.0-1 0 0.00 Single Sample directioNAl Pathway Perturbation analYsis pekkarr 2024-05-02 20:58 (UTC)
r-seqsqc 1.26.0-1 0 0.00 A bioconductor package for sample quality check with next generation sequencing data BioArchLinuxBot 2024-05-02 20:42 (UTC)
r-awst 1.12.0-1 0 0.00 Asymmetric Within-Sample Transformation BioArchLinuxBot 2024-05-02 19:54 (UTC)
r-aldex2 1.36.0-1 0 0.00 Analysis Of Differential Abundance Taking Sample Variation Into Account BioArchLinuxBot 2024-05-02 19:17 (UTC)
r-lionessr 1.18.0-1 0 0.00 Modeling networks for individual samples using LIONESS BioArchLinuxBot 2024-05-02 19:09 (UTC)
r-raggedexperiment 1.28.0-1 0 0.00 Representation of Sparse Experiments and Assays Across Samples BioArchLinuxBot 2024-05-02 19:04 (UTC)
r-multtest 2.60.0-1 0 0.00 Resampling-based multiple hypothesis testing BioArchLinuxBot 2024-05-02 12:13 (UTC)
hqplayer-embedded 5.6.1-1 5 0.00 Signalyst HQPlayer Embedded HQPlayer - the high-end upsampling multichannel software HD-audio player blackhole 2024-05-02 10:41 (UTC)
hqplayer-embedded-sse 5.6.1-1 0 0.00 Signalyst HQPlayer Embedded HQPlayer - the high-end upsampling multichannel software HD-audio player blackhole 2024-05-02 10:40 (UTC)
r-cnanorm 1.50.0-1 0 0.00 A normalization method for Copy Number Aberration in cancer samples BioArchLinuxBot 2024-05-02 05:13 (UTC)
r-rnaseqpower 1.44.0-1 0 0.00 Sample size for RNAseq studies BioArchLinuxBot 2024-05-02 04:20 (UTC)
r-osat 1.52.0-1 0 0.00 Optimal Sample Assignment Tool BioArchLinuxBot 2024-05-02 04:15 (UTC)
r-samspectral 1.58.0-1 0 0.00 Identifies cell population in flow cytometry data BioArchLinuxBot 2024-05-02 03:19 (UTC)
r-sizepower 1.74.0-1 0 0.00 Sample Size and Power Calculation in Micorarray Studies BioArchLinuxBot 2024-05-02 03:15 (UTC)
r-genesis 2.34.0-1 0 0.00 GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness BioArchLinuxBot 2024-05-02 02:29 (UTC)
r-cntools 1.60.0-1 0 0.00 Convert segment data into a region by sample matrix to allow for other high level computational analyses. BioArchLinuxBot 2024-05-02 02:10 (UTC)
r-reconsi 1.16.0-1 0 0.00 Resampling Collapsed Null Distributions for Simultaneous Inference BioArchLinuxBot 2024-05-02 01:45 (UTC)
r-degraph 1.56.0-1 0 0.00 Two-sample tests on a graph BioArchLinuxBot 2024-05-01 23:02 (UTC)
r-kcsmart 2.62.0-1 0 0.00 Multi sample aCGH analysis package using kernel convolution BioArchLinuxBot 2024-05-01 22:58 (UTC)
r-deconrnaseq 1.46.0-1 0 0.00 Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data BioArchLinuxBot 2024-05-01 22:46 (UTC)
r-flowploidy 1.30.0-1 0 0.00 Analyze flow cytometer data to determine sample ploidy BioArchLinuxBot 2024-05-01 20:42 (UTC)
r-mdp 1.24.0-1 0 0.00 Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls BioArchLinuxBot 2024-05-01 20:30 (UTC)
r-omixer 1.14.0-1 0 0.00 Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies BioArchLinuxBot 2024-05-01 20:16 (UTC)
r-ocplus 1.78.0-1 0 0.00 Operating characteristics plus sample size and local fdr for microarray experiments BioArchLinuxBot 2024-05-01 19:05 (UTC)
r-epidish 2.20.0-1 0 0.00 Epigenetic Dissection of Intra-Sample-Heterogeneity BioArchLinuxBot 2024-05-01 19:05 (UTC)

608 packages found. Page 1 of 13.

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