794 packages found. Page 1 of 16.

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Name Version Votes Popularity? Description Maintainer Last Updated
bowtie2-bin 2.5.4-1 0 0.00 Tool for aligning sequencing reads to long reference sequences Chocobo1 2024-05-17 04:14 (UTC)
r-nanomethviz 3.0.2-1 0 0.00 Visualise methlation data from Oxford Nanopore sequencing BioArchLinuxBot 2024-05-17 00:02 (UTC)
python-sdv 1.13.1-1 0 0.00 Generate synthetic data for single table, multi table and sequential data carlosal1015 2024-05-16 21:28 (UTC)
r-genomicplot 1.2.1-1 0 0.00 Plot profiles of next generation sequencing data in genomic features pekkarr 2024-05-15 18:06 (UTC)
python-pytantan 0.1.1-1 0 0.00 Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences. althonos 2024-05-15 09:54 (UTC)
python-pyfaidx 0.8.1.1-1 2 0.00 Efficient pythonic random access to fasta subsequences. vejnar 2024-05-15 01:53 (UTC)
r-speckle 1.4.0-1 0 0.00 Statistical methods for analysing single cell RNA-seq data pekkarr 2024-05-11 12:18 (UTC)
r-methtargetedngs 1.36.0-1 0 0.00 Perform Methylation Analysis on Next Generation Sequencing Data BioArchLinuxBot 2024-05-11 12:03 (UTC)
r-gsva 1.52.2-1 0 0.00 Gene Set Variation Analysis for Microarray and RNA-Seq Data BioArchLinuxBot 2024-05-10 18:16 (UTC)
r-hermes 1.8.0-1 0 0.00 Preprocessing, analyzing, and reporting of RNA-seq data pekkarr 2024-05-10 12:35 (UTC)
r-multirnaflow 1.2.0-1 0 0.00 An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions pekkarr 2024-05-10 12:33 (UTC)
r-genproseq 1.8.0-1 0 0.00 Generating Protein Sequences with Deep Generative Models pekkarr 2024-05-10 12:24 (UTC)
r-humantranscriptomecompendium 1.20.0-1 0 0.00 Tools to work with a Compendium of 181000 human transcriptome sequencing studies BioArchLinuxBot 2024-05-10 12:10 (UTC)
r-rnaseqcovarimpute 1.2.0-1 0 0.00 Impute Covariate Data in RNA Sequencing Studies pekkarr 2024-05-10 12:04 (UTC)
hybpiper 2.1.7-1 0 0.00 Recovering genes from targeted sequence capture data https://doi.org/10.3732/apps.1600016 malacology 2024-05-09 06:01 (UTC)
comet-ms-bin 2024.01.0-3 0 0.00 Comet: an open source tandem mass spectrometry (MS/MS) sequence database search tool levitsky 2024-05-08 21:35 (UTC)
r-clustifyr 1.16.0-1 0 0.00 Classifier for Single-cell RNA-seq Using Cell Clusters BioArchLinuxBot 2024-05-08 18:15 (UTC)
r-ribodipa 1.12.0-1 0 0.00 Differential pattern analysis for Ribo-seq data BioArchLinuxBot 2024-05-08 18:09 (UTC)
r-degnorm 1.14.0-1 0 0.00 degradation normalization for RNA-seq data BioArchLinuxBot 2024-05-08 18:08 (UTC)
r-proactiv 1.14.0-1 0 0.00 Estimate Promoter Activity from RNA-Seq data BioArchLinuxBot 2024-05-08 18:03 (UTC)
r-phantasuslite 1.2.0-1 0 0.00 Loading and annotation RNA-seq counts matrices pekkarr 2024-05-08 18:03 (UTC)
stringtie 2.2.3-1 0 0.00 A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts malacology 2024-05-08 06:01 (UTC)
r-isomirs 1.32.1-1 0 0.00 Analyze isomiRs and miRNAs from small RNA-seq BioArchLinuxBot 2024-05-07 18:05 (UTC)
fibonacci 1.0-1 0 0.00 A very simple fibonacci sequence implementation adridoesthings 2024-05-07 16:18 (UTC)
r-extrachips 1.8.1-1 0 0.00 Additional functions for working with ChIP-Seq data pekkarr 2024-05-07 12:31 (UTC)
r-flames 1.10.0-1 0 0.00 Full Length Analysis of Mutations and Splicing in long read RNA-seq data BioArchLinuxBot 2024-05-07 12:18 (UTC)
r-aspli 2.14.0-1 0 0.00 Analysis of Alternative Splicing Using RNA-Seq BioArchLinuxBot 2024-05-07 12:16 (UTC)
r-metaseqr2 1.16.0-1 0 0.00 An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms BioArchLinuxBot 2024-05-07 12:12 (UTC)
r-customprodb 1.44.0-1 0 0.00 Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search BioArchLinuxBot 2024-05-07 12:08 (UTC)
r-dmrcate 3.0.0-1 0 0.00 Methylation array and sequencing spatial analysis methods BioArchLinuxBot 2024-05-07 00:02 (UTC)
r-granie 1.8.0-1 0 0.00 Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data pekkarr 2024-05-06 18:12 (UTC)
r-easycelltype 1.6.0-1 0 0.00 Annotate cell types for scRNA-seq data pekkarr 2024-05-06 18:06 (UTC)
r-katdetectr 1.6.0-1 0 0.00 Detection, Characterization and Visualization of Kataegis in Sequencing Data pekkarr 2024-05-06 18:03 (UTC)
edlib 1.2.7-5 0 0.00 Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance qubidt 2024-05-06 14:57 (UTC)
python-pyfamsa 0.4.0-1 0 0.00 Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments althonos 2024-05-06 14:44 (UTC)
r-demuxsnp 1.2.0-1 0 0.00 scRNAseq demultiplexing using cell hashing and SNPs pekkarr 2024-05-06 12:17 (UTC)
r-isoformswitchanalyzer 2.4.0-1 0 0.00 Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data BioArchLinuxBot 2024-05-06 12:06 (UTC)
r-atacseqtfea 1.6.0-1 0 0.00 Transcription Factor Enrichment Analysis for ATAC-seq pekkarr 2024-05-06 12:04 (UTC)
python-scoring-matrices 0.2.0-1 0 0.00 Dependency free, Cython-compatible scoring matrices to use with biological sequences. althonos 2024-05-06 11:21 (UTC)
vgmtrans-git r1283.4b3cab2-1 0 0.00 Converter for sequenced videogame music ettolrach 2024-05-06 00:33 (UTC)
r-gdnax 1.2.0-1 0 0.00 Diagnostics for assessing genomic DNA contamination in RNA-seq data pekkarr 2024-05-05 18:06 (UTC)
mumps-seq 5.7.1-1 2 0.00 Sparse solver library using Gaussian elimination (sequential version) carlosal1015 2024-05-05 17:56 (UTC)
r-scrnaseqapp 1.4.0-1 0 0.00 A single-cell RNAseq Shiny app-package pekkarr 2024-05-05 12:17 (UTC)
r-singlecelltk 2.14.0-1 0 0.00 Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data BioArchLinuxBot 2024-05-04 18:42 (UTC)
r-ataccogaps 1.6.0-1 0 0.00 Analysis Tools for scATACseq Data with CoGAPS pekkarr 2024-05-04 18:41 (UTC)
r-scrnaseq 2.18.0-1 0 0.00 Collection of Public Single-Cell RNA-Seq Datasets BioArchLinuxBot 2024-05-04 18:38 (UTC)
r-rnamodr 1.18.0-1 0 0.00 Detection of post-transcriptional modifications in high throughput sequencing data BioArchLinuxBot 2024-05-04 18:36 (UTC)
r-xnastring 1.12.0-1 0 0.00 Efficient Manipulation of Modified Oligonucleotide Sequences BioArchLinuxBot 2024-05-04 18:04 (UTC)
r-fraser 2.0.0-1 0 0.00 Find RAre Splicing Events in RNA-Seq Data BioArchLinuxBot 2024-05-04 12:26 (UTC)
r-msa2dist 1.8.0-1 0 0.00 MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis pekkarr 2024-05-04 12:18 (UTC)

794 packages found. Page 1 of 16.

1 2 3 4 5 6 .. 16 Next › Last »