bowtie2-bin
|
2.5.4-1 |
0 |
0.00
|
Tool for aligning sequencing reads to long reference sequences |
Chocobo1
|
2024-05-17 04:14 (UTC) |
r-nanomethviz
|
3.0.2-1 |
0 |
0.00
|
Visualise methlation data from Oxford Nanopore sequencing |
BioArchLinuxBot
|
2024-05-17 00:02 (UTC) |
python-sdv
|
1.13.1-1 |
0 |
0.00
|
Generate synthetic data for single table, multi table and sequential data |
carlosal1015
|
2024-05-16 21:28 (UTC) |
r-genomicplot
|
1.2.1-1 |
0 |
0.00
|
Plot profiles of next generation sequencing data in genomic features |
pekkarr
|
2024-05-15 18:06 (UTC) |
python-pytantan
|
0.1.1-1 |
0 |
0.00
|
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences. |
althonos
|
2024-05-15 09:54 (UTC) |
python-pyfaidx
|
0.8.1.1-1 |
2 |
0.00
|
Efficient pythonic random access to fasta subsequences. |
vejnar
|
2024-05-15 01:53 (UTC) |
r-speckle
|
1.4.0-1 |
0 |
0.00
|
Statistical methods for analysing single cell RNA-seq data |
pekkarr
|
2024-05-11 12:18 (UTC) |
r-methtargetedngs
|
1.36.0-1 |
0 |
0.00
|
Perform Methylation Analysis on Next Generation Sequencing Data |
BioArchLinuxBot
|
2024-05-11 12:03 (UTC) |
r-gsva
|
1.52.2-1 |
0 |
0.00
|
Gene Set Variation Analysis for Microarray and RNA-Seq Data |
BioArchLinuxBot
|
2024-05-10 18:16 (UTC) |
r-hermes
|
1.8.0-1 |
0 |
0.00
|
Preprocessing, analyzing, and reporting of RNA-seq data |
pekkarr
|
2024-05-10 12:35 (UTC) |
r-multirnaflow
|
1.2.0-1 |
0 |
0.00
|
An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions |
pekkarr
|
2024-05-10 12:33 (UTC) |
r-genproseq
|
1.8.0-1 |
0 |
0.00
|
Generating Protein Sequences with Deep Generative Models |
pekkarr
|
2024-05-10 12:24 (UTC) |
r-humantranscriptomecompendium
|
1.20.0-1 |
0 |
0.00
|
Tools to work with a Compendium of 181000 human transcriptome sequencing studies |
BioArchLinuxBot
|
2024-05-10 12:10 (UTC) |
r-rnaseqcovarimpute
|
1.2.0-1 |
0 |
0.00
|
Impute Covariate Data in RNA Sequencing Studies |
pekkarr
|
2024-05-10 12:04 (UTC) |
hybpiper
|
2.1.7-1 |
0 |
0.00
|
Recovering genes from targeted sequence capture data https://doi.org/10.3732/apps.1600016 |
malacology
|
2024-05-09 06:01 (UTC) |
comet-ms-bin
|
2024.01.0-3 |
0 |
0.00
|
Comet: an open source tandem mass spectrometry (MS/MS) sequence database search tool |
levitsky
|
2024-05-08 21:35 (UTC) |
r-clustifyr
|
1.16.0-1 |
0 |
0.00
|
Classifier for Single-cell RNA-seq Using Cell Clusters |
BioArchLinuxBot
|
2024-05-08 18:15 (UTC) |
r-ribodipa
|
1.12.0-1 |
0 |
0.00
|
Differential pattern analysis for Ribo-seq data |
BioArchLinuxBot
|
2024-05-08 18:09 (UTC) |
r-degnorm
|
1.14.0-1 |
0 |
0.00
|
degradation normalization for RNA-seq data |
BioArchLinuxBot
|
2024-05-08 18:08 (UTC) |
r-proactiv
|
1.14.0-1 |
0 |
0.00
|
Estimate Promoter Activity from RNA-Seq data |
BioArchLinuxBot
|
2024-05-08 18:03 (UTC) |
r-phantasuslite
|
1.2.0-1 |
0 |
0.00
|
Loading and annotation RNA-seq counts matrices |
pekkarr
|
2024-05-08 18:03 (UTC) |
stringtie
|
2.2.3-1 |
0 |
0.00
|
A fast and highly efficient assembler of RNA-Seq alignments into potential transcripts |
malacology
|
2024-05-08 06:01 (UTC) |
r-isomirs
|
1.32.1-1 |
0 |
0.00
|
Analyze isomiRs and miRNAs from small RNA-seq |
BioArchLinuxBot
|
2024-05-07 18:05 (UTC) |
fibonacci
|
1.0-1 |
0 |
0.00
|
A very simple fibonacci sequence implementation |
adridoesthings
|
2024-05-07 16:18 (UTC) |
r-extrachips
|
1.8.1-1 |
0 |
0.00
|
Additional functions for working with ChIP-Seq data |
pekkarr
|
2024-05-07 12:31 (UTC) |
r-flames
|
1.10.0-1 |
0 |
0.00
|
Full Length Analysis of Mutations and Splicing in long read RNA-seq data |
BioArchLinuxBot
|
2024-05-07 12:18 (UTC) |
r-aspli
|
2.14.0-1 |
0 |
0.00
|
Analysis of Alternative Splicing Using RNA-Seq |
BioArchLinuxBot
|
2024-05-07 12:16 (UTC) |
r-metaseqr2
|
1.16.0-1 |
0 |
0.00
|
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms |
BioArchLinuxBot
|
2024-05-07 12:12 (UTC) |
r-customprodb
|
1.44.0-1 |
0 |
0.00
|
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search |
BioArchLinuxBot
|
2024-05-07 12:08 (UTC) |
r-dmrcate
|
3.0.0-1 |
0 |
0.00
|
Methylation array and sequencing spatial analysis methods |
BioArchLinuxBot
|
2024-05-07 00:02 (UTC) |
r-granie
|
1.8.0-1 |
0 |
0.00
|
Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq data |
pekkarr
|
2024-05-06 18:12 (UTC) |
r-easycelltype
|
1.6.0-1 |
0 |
0.00
|
Annotate cell types for scRNA-seq data |
pekkarr
|
2024-05-06 18:06 (UTC) |
r-katdetectr
|
1.6.0-1 |
0 |
0.00
|
Detection, Characterization and Visualization of Kataegis in Sequencing Data |
pekkarr
|
2024-05-06 18:03 (UTC) |
edlib
|
1.2.7-5 |
0 |
0.00
|
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance |
qubidt
|
2024-05-06 14:57 (UTC) |
python-pyfamsa
|
0.4.0-1 |
0 |
0.00
|
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments |
althonos
|
2024-05-06 14:44 (UTC) |
r-demuxsnp
|
1.2.0-1 |
0 |
0.00
|
scRNAseq demultiplexing using cell hashing and SNPs |
pekkarr
|
2024-05-06 12:17 (UTC) |
r-isoformswitchanalyzer
|
2.4.0-1 |
0 |
0.00
|
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data |
BioArchLinuxBot
|
2024-05-06 12:06 (UTC) |
r-atacseqtfea
|
1.6.0-1 |
0 |
0.00
|
Transcription Factor Enrichment Analysis for ATAC-seq |
pekkarr
|
2024-05-06 12:04 (UTC) |
python-scoring-matrices
|
0.2.0-1 |
0 |
0.00
|
Dependency free, Cython-compatible scoring matrices to use with biological sequences. |
althonos
|
2024-05-06 11:21 (UTC) |
vgmtrans-git
|
r1283.4b3cab2-1 |
0 |
0.00
|
Converter for sequenced videogame music |
ettolrach
|
2024-05-06 00:33 (UTC) |
r-gdnax
|
1.2.0-1 |
0 |
0.00
|
Diagnostics for assessing genomic DNA contamination in RNA-seq data |
pekkarr
|
2024-05-05 18:06 (UTC) |
mumps-seq
|
5.7.1-1 |
2 |
0.00
|
Sparse solver library using Gaussian elimination (sequential version) |
carlosal1015
|
2024-05-05 17:56 (UTC) |
r-scrnaseqapp
|
1.4.0-1 |
0 |
0.00
|
A single-cell RNAseq Shiny app-package |
pekkarr
|
2024-05-05 12:17 (UTC) |
r-singlecelltk
|
2.14.0-1 |
0 |
0.00
|
Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data |
BioArchLinuxBot
|
2024-05-04 18:42 (UTC) |
r-ataccogaps
|
1.6.0-1 |
0 |
0.00
|
Analysis Tools for scATACseq Data with CoGAPS |
pekkarr
|
2024-05-04 18:41 (UTC) |
r-scrnaseq
|
2.18.0-1 |
0 |
0.00
|
Collection of Public Single-Cell RNA-Seq Datasets |
BioArchLinuxBot
|
2024-05-04 18:38 (UTC) |
r-rnamodr
|
1.18.0-1 |
0 |
0.00
|
Detection of post-transcriptional modifications in high throughput sequencing data |
BioArchLinuxBot
|
2024-05-04 18:36 (UTC) |
r-xnastring
|
1.12.0-1 |
0 |
0.00
|
Efficient Manipulation of Modified Oligonucleotide Sequences |
BioArchLinuxBot
|
2024-05-04 18:04 (UTC) |
r-fraser
|
2.0.0-1 |
0 |
0.00
|
Find RAre Splicing Events in RNA-Seq Data |
BioArchLinuxBot
|
2024-05-04 12:26 (UTC) |
r-msa2dist
|
1.8.0-1 |
0 |
0.00
|
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis |
pekkarr
|
2024-05-04 12:18 (UTC) |