145 packages found. Page 1 of 3.

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Name Version Votes Popularity? Description Maintainer
cutepeaks-git 0.2.3-1 1 0.00 A simple viewer for Sanger sequencing files Direct-A
htslib 1.15.1-1 18 0.00 A C library for high-throughput sequencing data formats meanjollies
htscodecs 1.2.2-1 1 0.00 Custom compression for sequencing formats, e.g. CRAM mschu
picard-tools 2.27.4-1 8 0.00 set of tools for working with next generation sequencing data in the BAM format malacology
samtools 1.15.1-1 29 0.00 tools for manipulating next-generation sequencing data r6eve
stampy 1.0.32-1 1 0.00 Mapper of short reads from illumina sequencing machines onto a reference genome iosonofabio
sniffles 1.0.12-1 0 0.00 Structural variation caller using third generation sequencing tmiller
samtools-git 1.10.r98.gfaab8b0-1 0 0.00 Tools for manipulating next-generation sequencing data Chocobo1
r-tress 1.2.0-1 0 0.00 Toolbox for mRNA epigenetics sequencing analysis BioArchLinuxBot
r-tradeseq 1.10.0-1 0 0.00 trajectory-based differential expression analysis for sequencing data BioArchLinuxBot
r-titancna 1.34.0-1 0 0.00 Subclonal copy number and LOH prediction from whole genome sequencing of tumours BioArchLinuxBot
r-tcseq 1.20.0-1 0 0.00 Time course sequencing data analysis BioArchLinuxBot
r-tarseqqc 1.25.1-1 0 0.00 TARgeted SEQuencing Experiment Quality Control BioArchLinuxBot
r-subseq 1.26.0-1 0 0.00 Subsampling of high-throughput sequencing count data BioArchLinuxBot
r-spsimseq 1.6.0-1 0 0.00 Semi-parametric simulation tool for bulk and single-cell RNA sequencing data BioArchLinuxBot
r-splatter 1.20.0-1 0 0.00 Simple Simulation of Single-cell RNA Sequencing Data BioArchLinuxBot
r-somnibus 1.4.0-1 0 0.00 Smooth modeling of bisulfite sequencing BioArchLinuxBot
r-slingshot 2.4.0-1 0 0.00 Tools for ordering single-cell sequencing BioArchLinuxBot
r-seqsqc 1.18.0-1 0 0.00 A bioconductor package for sample quality check with next generation sequencing data BioArchLinuxBot
r-seqsetvis 1.16.0-1 0 0.00 Set Based Visualizations for Next-Gen Sequencing Data BioArchLinuxBot
r-seqcna.annot 1.32.0-3 0 0.00 Annotation for the copy number analysis of deep sequencing cancer data with seqCNA BioArchLinuxBot
r-seqcna 1.42.0-1 0 0.00 Copy number analysis of high-throughput sequencing cancer data BioArchLinuxBot
r-seqcat 1.18.0-1 0 0.00 High Throughput Sequencing Cell Authentication Toolkit BioArchLinuxBot
r-seqbias 1.44.0-1 0 0.00 Estimation of per-position bias in high-throughput sequencing data BioArchLinuxBot
r-seq2pathway 1.28.0-1 0 0.00 a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data BioArchLinuxBot
r-segmentseq 2.30.0-1 0 0.00 Methods for identifying small RNA loci from high-throughput sequencing data BioArchLinuxBot
r-sdams 1.16.0-1 0 0.00 Differential Abundant/Expression Analysis for Metabolomics, Proteomics and single-cell RNA sequencing Data BioArchLinuxBot
r-scthi 1.8.0-1 0 0.00 Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data BioArchLinuxBot
r-scshapes 1.2.0-1 0 0.00 A Statistical Framework for Modeling and Identifying Differential Distributions in Single-cell RNA-sequencing Data BioArchLinuxBot
r-scope 1.8.0-1 0 0.00 A normalization and copy number estimation method for single-cell DNA sequencing BioArchLinuxBot
r-scds 1.12.0-1 0 0.00 In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data BioArchLinuxBot
r-scclassifr 1.2.0-3 0 0.00 Pretrained learning models for cell type prediction on single cell RNA-sequencing data BioArchLinuxBot
r-sccb2 1.6.0-1 0 0.00 CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data BioArchLinuxBot
r-scannotatr 1.2.0-1 0 0.00 Pretrained learning models for cell type prediction on single cell RNA-sequencing data BioArchLinuxBot
r-saturn 1.4.0-1 0 0.00 Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing Applications BioArchLinuxBot
r-sangerseqr 1.32.0-1 0 0.00 Tools for Sanger Sequencing Data in R BioArchLinuxBot
r-rsubread 2.10.4-1 0 0.00 Mapping, quantification and variant analysis of sequencing data BioArchLinuxBot
r-rqc 1.30.0-1 0 0.00 Quality Control Tool for High-Throughput Sequencing Data BioArchLinuxBot
r-rnamodr 1.10.0-1 0 0.00 Detection of post-transcriptional modifications in high throughput sequencing data BioArchLinuxBot
r-riboseqr 1.30.0-1 0 0.00 Analysis of sequencing data from ribosome profiling experiments BioArchLinuxBot
r-rhtslib 1.28.0-1 0 0.00 HTSlib high-throughput sequencing library as an R package greyltc
r-redseq 1.42.0-1 0 0.00 Analysis of high-throughput sequencing data processed by restriction enzyme digestion BioArchLinuxBot
r-rcsl 1.4.0-1 0 0.00 Rank Constrained Similarity Learning for single cell RNA sequencing data BioArchLinuxBot
r-rbec 1.4.0-1 0 0.00 Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities BioArchLinuxBot
r-rarevariantvis 2.24.0-1 0 0.00 A suite for analysis of rare genomic variants in whole genome sequencing data BioArchLinuxBot
r-r3cseq 1.42.0-1 0 0.00 Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq) BioArchLinuxBot
r-qdnaseq 1.32.0-1 0 0.00 Quantitative DNA Sequencing for Chromosomal Aberrations BioArchLinuxBot
r-purecn 2.2.0-1 0 0.00 Copy number calling and SNV classification using targeted short read sequencing BioArchLinuxBot
r-ppcseq 1.4.0-1 0 0.00 Probabilistic Outlier Identification for RNA Sequencing Generalized Linear Models BioArchLinuxBot
r-poiclaclu 1.0.2.1-4 0 0.00 Classification and Clustering of Sequencing Data Based on a Poisson Model BioArchLinuxBot

145 packages found. Page 1 of 3.

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