|
r-stjoincount
|
1.6.0-1 |
0 |
0.00
|
Join count statistic for quantifying spatial correlation between clusters |
pekkarr
|
2024-05-03 09:03 (UTC) |
|
r-stexampledata
|
1.11.1-1 |
0 |
0.00
|
Collection of spatially-resolved transcriptomics datasets in SpatialExperiment Bioconductor format |
pekkarr
|
2024-05-03 08:56 (UTC) |
|
r-stdeconvolve
|
1.8.0-1 |
0 |
0.00
|
Reference-free Cell-Type Deconvolution of Multi-Cellular Spatially Resolved Transcriptomics Data |
pekkarr
|
2024-05-02 05:21 (UTC) |
|
r-statial
|
1.6.0-1 |
0 |
0.00
|
A package to identify changes in cell state relative to spatial associations |
pekkarr
|
2024-05-03 08:57 (UTC) |
|
r-standr
|
1.8.0-1 |
0 |
0.00
|
Spatial transcriptome analyses of Nanostring's DSP data in R |
pekkarr
|
2024-05-03 09:14 (UTC) |
|
r-spqn
|
1.16.0-1 |
0 |
0.00
|
Spatial quantile normalization |
BioArchLinuxBot
|
2024-05-03 07:40 (UTC) |
|
r-spotlight
|
1.8.0-1 |
0 |
0.00
|
`SPOTlight`: Spatial Transcriptomics Deconvolution |
pekkarr
|
2024-05-04 18:15 (UTC) |
|
r-spotclean
|
1.6.0-1 |
0 |
0.00
|
SpotClean adjusts for spot swapping in spatial transcriptomics data |
pekkarr
|
2024-05-03 09:00 (UTC) |
|
r-splancs
|
2.01.44-2 |
0 |
0.00
|
Spatial and Space-Time Point Pattern Analysis |
BioArchLinuxBot
|
2024-04-08 18:06 (UTC) |
|
r-spicyr
|
1.16.0-1 |
0 |
0.00
|
Spatial analysis of in situ cytometry data |
BioArchLinuxBot
|
2024-05-03 13:43 (UTC) |
|
r-spiat
|
1.6.0-1 |
0 |
0.00
|
Spatial Image Analysis of Tissues |
pekkarr
|
2024-05-03 09:12 (UTC) |
|
r-spdep
|
1.3.3-1 |
0 |
0.00
|
Spatial Dependence: Weighting Schemes, Statistics |
pekkarr
|
2024-02-07 18:05 (UTC) |
|
r-spdata
|
2.3.0-3 |
0 |
0.00
|
Datasets for Spatial Analysis |
pekkarr
|
2024-04-25 00:25 (UTC) |
|
r-spbayes
|
0.4.7-1 |
0 |
0.00
|
Univariate and Multivariate Spatial-Temporal Modeling |
BioArchLinuxBot
|
2023-12-12 00:04 (UTC) |
|
r-spatstat
|
3.0.8-1 |
0 |
0.00
|
Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests |
BioArchLinuxBot
|
2024-03-26 18:08 (UTC) |
|
r-spatialtools
|
1.0.5-1 |
0 |
0.00
|
Tools for Spatial Data Analysis |
BioArchLinuxBot
|
2023-07-19 00:03 (UTC) |
|
r-spatiallibd
|
1.16.0-1 |
0 |
0.00
|
an R/Bioconductor package to visualize spatially-resolved transcriptomics data |
pekkarr
|
2024-05-04 18:11 (UTC) |
|
r-spatialheatmap
|
2.10.0-1 |
0 |
0.00
|
Creating spatial heatmaps from R and Shiny |
BioArchLinuxBot
|
2024-05-04 18:13 (UTC) |
|
r-spatialfeatureexperiment
|
1.4.0-3 |
0 |
0.00
|
Integrating SpatialExperiment with Simple Features in sf |
pekkarr
|
2024-04-28 15:00 (UTC) |
|
r-spatialextremes
|
2.1.0-5 |
0 |
0.00
|
Modelling Spatial Extremes |
BioArchLinuxBot
|
2022-06-06 15:50 (UTC) |
|
r-spatialexperiment
|
1.14.0-1 |
0 |
0.00
|
S4 Class for Spatial Experiments handling |
BioArchLinuxBot
|
2024-05-03 07:42 (UTC) |
|
r-spatialdecon
|
1.14.0-1 |
0 |
0.00
|
Deconvolution of mixed cells from spatial and/or bulk gene expression data |
BioArchLinuxBot
|
2024-05-03 08:38 (UTC) |
|
r-spatialde
|
1.10.0-1 |
0 |
0.00
|
R wrapper for SpatialDE |
BioArchLinuxBot
|
2024-05-03 08:52 (UTC) |
|
r-spatialcpie
|
1.20.0-1 |
0 |
0.00
|
Cluster analysis of Spatial Transcriptomics data |
BioArchLinuxBot
|
2024-05-03 08:13 (UTC) |
|
r-spasim
|
1.6.0-1 |
0 |
0.00
|
Spatial point data simulator for tissue images |
pekkarr
|
2024-05-03 09:02 (UTC) |
|
r-spaniel
|
1.18.0-1 |
0 |
0.00
|
Spatial Transcriptomics Analysis |
BioArchLinuxBot
|
2024-05-03 08:41 (UTC) |
|
r-spamm
|
4.4.16-1 |
0 |
0.00
|
Mixed-Effect Models, with or without Spatial Random Effects |
pekkarr
|
2024-03-23 11:26 (UTC) |
|
r-sfedata
|
1.6.0-1 |
0 |
0.00
|
Example SpatialFeatureExperiment datasets |
pekkarr
|
2024-05-04 18:25 (UTC) |
|
r-scider
|
1.2.0-1 |
0 |
0.00
|
Spatial cell-type inter-correlation by density in R |
pekkarr
|
2024-05-03 09:11 (UTC) |
|
r-scfeatures
|
1.4.0-1 |
0 |
0.00
|
Multi-view representations of single-cell and spatial data for disease outcome prediction |
pekkarr
|
2024-05-03 18:38 (UTC) |
|
r-scdesign3
|
1.2.0-1 |
0 |
0.00
|
A unified framework of realistic in silico data generation and statistical model inference for single-cell and spatial omics |
pekkarr
|
2024-05-05 12:05 (UTC) |
|
r-santa
|
2.38.0-1 |
0 |
0.00
|
Spatial Analysis of Network Associations |
BioArchLinuxBot
|
2023-10-26 00:01 (UTC) |
|
r-rgdal
|
1.6.7-1 |
0 |
0.00
|
Bindings for the 'Geospatial' Data Abstraction Library |
carlosal1015
|
2023-06-01 03:49 (UTC) |
|
r-retrofit
|
1.4.0-1 |
0 |
0.00
|
Reference-free deconvolution of cell mixtures in spatial transcriptomics |
pekkarr
|
2024-05-02 04:49 (UTC) |
|
r-regionalst
|
1.2.0-1 |
0 |
0.00
|
Investigating regions of interest and performing cross-regional analysis with spatial transcriptomics data |
pekkarr
|
2024-05-03 03:48 (UTC) |
|
r-prolocgui
|
2.14.0-1 |
0 |
0.00
|
Interactive visualisation of spatial proteomics data |
BioArchLinuxBot
|
2024-05-03 14:56 (UTC) |
|
r-proloc
|
1.44.0-1 |
0 |
0.00
|
A unifying bioinformatics framework for spatial proteomics |
BioArchLinuxBot
|
2024-05-03 13:41 (UTC) |
|
r-nnsvg
|
1.6.4-1 |
0 |
0.00
|
Scalable identification of spatially variable genes in spatially-resolved transcriptomics data |
pekkarr
|
2024-03-20 18:14 (UTC) |
|
r-nnnorm
|
2.68.0-1 |
0 |
0.00
|
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets |
BioArchLinuxBot
|
2024-05-01 22:53 (UTC) |
|
r-moleculeexperiment
|
1.4.0-1 |
0 |
0.00
|
Prioritising a molecule-level storage of Spatial Transcriptomics Data |
pekkarr
|
2024-05-03 09:07 (UTC) |
|
r-mistyr
|
1.12.0-1 |
0 |
0.00
|
Multiview Intercellular SpaTial modeling framework |
BioArchLinuxBot
|
2024-05-03 08:42 (UTC) |
|
r-lisaclust
|
1.12.0-1 |
0 |
0.00
|
lisaClust: Clustering of Local Indicators of Spatial Association |
BioArchLinuxBot
|
2024-05-03 14:57 (UTC) |
|
r-hoodscanr
|
1.2.0-1 |
0 |
0.00
|
Spatial cellular neighbourhood scanning in R |
pekkarr
|
2024-05-03 09:08 (UTC) |
|
r-ggspavis
|
1.8.1-1 |
0 |
0.00
|
Visualization functions for spatially resolved transcriptomics data |
BioArchLinuxBot
|
2024-03-25 18:07 (UTC) |
|
r-fields
|
15.2-3 |
0 |
0.00
|
Tools for Spatial Data |
BioArchLinuxBot
|
2023-10-26 18:29 (UTC) |
|
r-elsa
|
1.1.28-3 |
0 |
0.00
|
Entropy-Based Local Indicator of Spatial Association |
pekkarr
|
2024-04-25 06:06 (UTC) |
|
r-dmrcate
|
3.0.0-1 |
0 |
0.00
|
Methylation array and sequencing spatial analysis methods |
BioArchLinuxBot
|
2024-05-07 00:02 (UTC) |
|
r-despace
|
1.4.0-1 |
0 |
0.00
|
a framework to discover spatially variable genes |
pekkarr
|
2024-05-03 09:04 (UTC) |
|
r-ctsv
|
1.6.0-1 |
0 |
0.00
|
Identification of cell-type-specific spatially variable genes accounting for excess zeros |
pekkarr
|
2024-05-03 09:05 (UTC) |
|
r-brisc
|
1.0.5-3 |
0 |
0.00
|
Fast Inference for Large Spatial Datasets using BRISC |
pekkarr
|
2024-04-25 09:04 (UTC) |