r-sfsmisc
|
1.1.18-1 |
0 |
0.00
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Utilities from 'Seminar fuer Statistik' ETH Zurich |
pekkarr
|
2024-04-25 18:09 (UTC) |
r-sfheaders
|
0.4.4-1 |
0 |
0.00
|
Converts Between R Objects and Simple Feature Objects |
peippo
|
2024-01-18 12:00 (UTC) |
r-sfedata
|
1.6.0-1 |
0 |
0.00
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Example SpatialFeatureExperiment datasets |
pekkarr
|
2024-05-04 18:25 (UTC) |
r-sfarrow
|
0.4.1-3 |
0 |
0.00
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Read/Write Simple Feature Objects ('sf') with 'Apache' 'Arrow' |
pekkarr
|
2024-04-25 13:02 (UTC) |
r-sf
|
1.0.16-1 |
1 |
0.00
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Simple Features for R |
peippo
|
2024-03-25 11:53 (UTC) |
r-sevenc
|
1.24.0-1 |
0 |
0.00
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Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs |
BioArchLinuxBot
|
2024-05-03 01:14 (UTC) |
r-sevenbridges
|
1.34.0-1 |
0 |
0.00
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Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R |
BioArchLinuxBot
|
2024-05-01 20:02 (UTC) |
r-seuratobject
|
5.0.2-1 |
0 |
0.00
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Data Structures for Single Cell Data |
BioArchLinuxBot
|
2024-05-08 18:14 (UTC) |
r-seurat
|
5.1.0-1 |
0 |
0.00
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Tools for Single Cell Genomics |
BioArchLinuxBot
|
2024-05-11 12:16 (UTC) |
r-settings
|
0.2.7-9 |
0 |
0.00
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Software Option Settings Manager for R |
BioArchLinuxBot
|
2024-02-08 18:02 (UTC) |
r-sets
|
1.0.25-2 |
0 |
0.00
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Generalized Sets, Customizable Sets and Intervals |
BioArchLinuxBot
|
2024-03-14 18:13 (UTC) |
r-setrng
|
2024.2.1-1 |
0 |
0.00
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Set (Normal) Random Number Generator and Seed |
BioArchLinuxBot
|
2024-02-18 18:02 (UTC) |
r-setools
|
1.18.0-1 |
0 |
0.00
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SEtools: tools for working with SummarizedExperiment |
BioArchLinuxBot
|
2024-05-03 13:51 (UTC) |
r-sessioninfo
|
1.2.2-7 |
1 |
0.00
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R Session Information |
BioArchLinuxBot
|
2022-10-18 12:34 (UTC) |
r-sesamedata
|
1.22.0-1 |
0 |
0.00
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Supporting Data for SeSAMe Package |
BioArchLinuxBot
|
2024-05-03 08:24 (UTC) |
r-sesame
|
1.22.1-1 |
0 |
0.00
|
SEnsible Step-wise Analysis of DNA MEthylation BeadChips |
BioArchLinuxBot
|
2024-05-26 00:09 (UTC) |
r-servr
|
0.30-1 |
0 |
0.00
|
A Simple HTTP Server to Serve Static Files or Dynamic Documents |
BioArchLinuxBot
|
2024-03-23 18:06 (UTC) |
r-seriation
|
1.5.5-1 |
0 |
0.00
|
Infrastructure for Ordering Objects Using Seriation |
BioArchLinuxBot
|
2024-04-18 00:02 (UTC) |
r-seqvartools
|
1.42.0-1 |
0 |
0.00
|
Tools for variant data |
BioArchLinuxBot
|
2024-05-02 01:53 (UTC) |
r-seqtools
|
1.38.0-1 |
0 |
0.00
|
Analysis of nucleotide, sequence and quality content on fastq files |
BioArchLinuxBot
|
2024-05-02 05:10 (UTC) |
r-seqsqc
|
1.26.0-1 |
0 |
0.00
|
A bioconductor package for sample quality check with next generation sequencing data |
BioArchLinuxBot
|
2024-05-02 20:42 (UTC) |
r-seqsetvis
|
1.24.0-1 |
0 |
0.00
|
Set Based Visualizations for Next-Gen Sequencing Data |
BioArchLinuxBot
|
2024-05-03 01:06 (UTC) |
r-seqpattern
|
1.36.0-1 |
0 |
0.00
|
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences |
BioArchLinuxBot
|
2024-05-02 00:07 (UTC) |
r-seqminer
|
9.4-1 |
0 |
0.00
|
Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R |
BioArchLinuxBot
|
2024-02-03 18:02 (UTC) |
r-seqmagick
|
0.1.7-2 |
0 |
0.00
|
Sequence Manipulation Utilities |
BioArchLinuxBot
|
2024-04-26 14:22 (UTC) |
r-seqlogo
|
1.70.0-1 |
0 |
0.00
|
Sequence logos for DNA sequence alignments |
BioArchLinuxBot
|
2024-05-02 03:17 (UTC) |
r-seqinr
|
4.2.36-1 |
0 |
0.00
|
Biological Sequences Retrieval and Analysis |
BioArchLinuxBot
|
2023-12-08 18:03 (UTC) |
r-seqgsea
|
1.44.0-1 |
0 |
0.00
|
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing |
BioArchLinuxBot
|
2024-05-02 23:07 (UTC) |
r-seqgate
|
1.14.0-1 |
0 |
0.00
|
Filtering of Lowly Expressed Features |
BioArchLinuxBot
|
2024-05-02 19:32 (UTC) |
r-seqcombo
|
1.26.0-1 |
0 |
0.00
|
Visualization Tool for Sequence Recombination and Reassortment |
BioArchLinuxBot
|
2024-05-01 21:30 (UTC) |
r-seqcna.annot
|
1.38.0-2 |
0 |
0.00
|
Annotation for the copy number analysis of deep sequencing cancer data with seqCNA |
BioArchLinuxBot
|
2024-03-15 14:10 (UTC) |
r-seqcna
|
1.48.0-1 |
0 |
0.00
|
Copy number analysis of high-throughput sequencing cancer data |
BioArchLinuxBot
|
2023-10-25 22:08 (UTC) |
r-seqcat
|
1.26.0-1 |
0 |
0.00
|
High Throughput Sequencing Cell Authentication Toolkit |
BioArchLinuxBot
|
2024-05-03 04:49 (UTC) |
r-seqbias
|
1.50.0-1 |
0 |
0.00
|
Estimation of per-position bias in high-throughput sequencing data |
BioArchLinuxBot
|
2023-10-26 02:57 (UTC) |
r-seqarray
|
1.44.0-1 |
0 |
0.00
|
Data management of large-scale whole-genome sequence variant calls |
BioArchLinuxBot
|
2024-05-02 00:09 (UTC) |
r-seqarchrplus
|
1.4.0-1 |
0 |
0.00
|
Downstream analyses of promoter sequence architectures and HTML report generation |
pekkarr
|
2024-05-03 04:24 (UTC) |
r-seqarchr
|
1.8.0-1 |
0 |
0.00
|
Identify Different Architectures of Sequence Elements |
pekkarr
|
2024-05-02 18:36 (UTC) |
r-seq2pathway.data
|
1.36.0-1 |
0 |
0.00
|
data set for R package seq2pathway |
BioArchLinuxBot
|
2024-05-04 00:14 (UTC) |
r-seq2pathway
|
1.36.0-1 |
0 |
0.00
|
a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data |
BioArchLinuxBot
|
2024-05-02 23:16 (UTC) |
r-seq.hotspot
|
1.4.0-1 |
0 |
0.00
|
Targeted sequencing panel design based on mutation hotspots |
pekkarr
|
2024-05-02 04:48 (UTC) |
r-sepira
|
1.22.0-1 |
0 |
0.00
|
Systems EPigenomics Inference of Regulatory Activity |
BioArchLinuxBot
|
2024-04-13 18:02 (UTC) |
r-sendmailr
|
1.4.0-5 |
0 |
0.00
|
Send Email Using R |
BioArchLinuxBot
|
2024-04-10 18:11 (UTC) |
r-semtools
|
0.5.6-6 |
0 |
0.00
|
Useful Tools for Structural Equation Modeling |
BioArchLinuxBot
|
2022-06-06 14:35 (UTC) |
r-semplot
|
1.1.6-1 |
0 |
0.00
|
Path Diagrams and Visual Analysis of Various SEM Packages' Output |
BioArchLinuxBot
|
2022-08-10 14:22 (UTC) |
r-semisup
|
1.28.0-1 |
0 |
0.00
|
Semi-Supervised Mixture Model |
BioArchLinuxBot
|
2024-05-02 04:35 (UTC) |
r-semdist
|
1.38.0-1 |
0 |
0.00
|
Information Accretion-based Function Predictor Evaluation |
BioArchLinuxBot
|
2024-05-03 12:12 (UTC) |
r-sem
|
3.1.15-4 |
0 |
0.00
|
Structural Equation Models |
BioArchLinuxBot
|
2022-06-06 14:33 (UTC) |
r-selex
|
1.36.0-1 |
0 |
0.00
|
Functions for analyzing SELEX-seq data |
BioArchLinuxBot
|
2024-05-02 00:28 (UTC) |
r-selectr
|
0.4.2-2 |
0 |
0.00
|
Translate CSS Selectors to XPath Expressions |
alhirzel
|
2021-05-26 01:23 (UTC) |
r-selectksigs
|
1.16.0-1 |
0 |
0.00
|
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation |
BioArchLinuxBot
|
2024-05-03 05:20 (UTC) |
r-segmentseq
|
2.38.0-1 |
0 |
0.00
|
Methods for identifying small RNA loci from high-throughput sequencing data |
BioArchLinuxBot
|
2024-05-03 01:26 (UTC) |
r-segmenter
|
1.10.0-1 |
0 |
0.00
|
Perform Chromatin Segmentation Analysis in R by Calling ChromHMM |
BioArchLinuxBot
|
2024-05-03 04:23 (UTC) |
r-segmented
|
2.1.0-1 |
0 |
0.00
|
Regression Models with Break-Points / Change-Points Estimation (with Possibly Random Effects) |
BioArchLinuxBot
|
2024-05-14 12:01 (UTC) |
r-sechm
|
1.12.0-1 |
0 |
0.00
|
sechm: Complex Heatmaps from a SummarizedExperiment |
BioArchLinuxBot
|
2024-05-02 20:26 (UTC) |
r-sde
|
2.0.18-1 |
0 |
0.00
|
Simulation and Inference for Stochastic Differential Equations |
AlexBocken
|
2024-01-11 20:26 (UTC) |
r-sdams
|
1.24.0-1 |
0 |
0.00
|
Differential Abundant/Expression Analysis for Metabolomics, Proteomics and single-cell RNA sequencing Data |
BioArchLinuxBot
|
2024-05-02 19:09 (UTC) |
r-scvir
|
1.4.0-1 |
0 |
0.00
|
experimental inferface from R to scvi-tools |
pekkarr
|
2024-05-03 01:55 (UTC) |
r-scuttle
|
1.14.0-1 |
0 |
0.00
|
Single-Cell RNA-Seq Analysis Utilities |
BioArchLinuxBot
|
2024-05-02 21:18 (UTC) |
r-sctreeviz
|
1.10.0-1 |
0 |
0.00
|
R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations |
BioArchLinuxBot
|
2024-05-03 14:45 (UTC) |
r-sctransform
|
0.4.1-1 |
0 |
0.00
|
Variance Stabilizing Transformations for Single Cell UMI Data |
BioArchLinuxBot
|
2023-10-19 06:01 (UTC) |
r-scthi
|
1.16.0-1 |
0 |
0.00
|
Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data |
BioArchLinuxBot
|
2024-05-01 19:49 (UTC) |
r-sctgif
|
1.18.0-1 |
0 |
0.00
|
Cell type annotation for unannotated single-cell RNA-Seq data |
BioArchLinuxBot
|
2024-05-03 12:53 (UTC) |
r-sctensor
|
2.14.0-1 |
0 |
0.00
|
Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition |
BioArchLinuxBot
|
2024-05-03 14:38 (UTC) |
r-scshapes
|
1.10.0-1 |
0 |
0.00
|
A Statistical Framework for Modeling and Identifying Differential Distributions in Single-cell RNA-sequencing Data |
BioArchLinuxBot
|
2024-05-01 19:50 (UTC) |
r-scs
|
3.2.4-4 |
0 |
0.00
|
Splitting Conic Solver |
BioArchLinuxBot
|
2024-04-24 21:03 (UTC) |
r-scrypt
|
0.1.6-3 |
0 |
0.00
|
Key Derivation Functions for R Based on Scrypt |
pekkarr
|
2024-04-25 02:37 (UTC) |
r-scry
|
1.16.0-1 |
0 |
0.00
|
Small-Count Analysis Methods for High-Dimensional Data |
BioArchLinuxBot
|
2024-05-02 21:40 (UTC) |
r-scruff
|
1.22.0-1 |
0 |
0.00
|
Single Cell RNA-Seq UMI Filtering Facilitator (scruff) |
BioArchLinuxBot
|
2024-05-03 13:32 (UTC) |
r-scrnaseqapp
|
1.4.0-1 |
0 |
0.00
|
A single-cell RNAseq Shiny app-package |
pekkarr
|
2024-05-05 12:17 (UTC) |
r-scrnaseq
|
2.18.0-1 |
0 |
0.00
|
Collection of Public Single-Cell RNA-Seq Datasets |
BioArchLinuxBot
|
2024-05-04 18:38 (UTC) |
r-scrime
|
1.3.5-10 |
0 |
0.00
|
Analysis of High-Dimensional Categorical Data Such as SNP Data |
BioArchLinuxBot
|
2024-03-15 14:11 (UTC) |
r-screpertoire
|
2.0.0-1 |
0 |
0.00
|
A toolkit for single-cell immune receptor profiling |
BioArchLinuxBot
|
2024-05-05 12:20 (UTC) |
r-screenr
|
1.6.0-1 |
0 |
0.00
|
Package to Perform High Throughput Biological Screening |
pekkarr
|
2024-05-02 05:48 (UTC) |
r-screencounter
|
1.4.0-1 |
0 |
0.00
|
Counting Reads in High-Throughput Sequencing Screens |
pekkarr
|
2024-05-02 20:05 (UTC) |
r-screcover
|
1.20.0-1 |
0 |
0.00
|
scRecover for imputation of single-cell RNA-seq data |
BioArchLinuxBot
|
2024-05-01 23:51 (UTC) |
r-screclassify
|
1.10.0-1 |
0 |
0.00
|
scReClassify: post hoc cell type classification of single-cell RNA-seq data |
BioArchLinuxBot
|
2024-05-02 21:28 (UTC) |
r-scran
|
1.32.0-1 |
0 |
0.00
|
Methods for Single-Cell RNA-Seq Data Analysis |
BioArchLinuxBot
|
2024-05-03 00:05 (UTC) |
r-scpipe
|
2.4.0-1 |
0 |
0.00
|
pipeline for single cell RNA-seq data analysis |
BioArchLinuxBot
|
2024-05-03 01:58 (UTC) |
r-scpca
|
1.18.0-1 |
0 |
0.00
|
Sparse Contrastive Principal Component Analysis |
BioArchLinuxBot
|
2024-05-02 00:48 (UTC) |
r-scp
|
1.14.0-1 |
0 |
0.00
|
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis |
BioArchLinuxBot
|
2024-05-05 12:19 (UTC) |
r-scoringrules
|
1.1.1-4 |
0 |
0.00
|
Scoring Rules for Parametric and Simulated Distribution Forecasts |
pekkarr
|
2024-04-25 07:53 (UTC) |
r-scoreinvhap
|
1.26.0-1 |
0 |
0.00
|
Get inversion status in predefined regions |
BioArchLinuxBot
|
2024-05-03 04:59 (UTC) |
r-scope
|
1.16.0-1 |
0 |
0.00
|
A normalization and copy number estimation method for single-cell DNA sequencing |
BioArchLinuxBot
|
2024-05-03 03:23 (UTC) |
r-sconify
|
1.24.0-1 |
0 |
0.00
|
A toolkit for performing KNN-based statistics for flow and mass cytometry data |
BioArchLinuxBot
|
2024-05-01 20:20 (UTC) |
r-scone
|
1.28.0-1 |
0 |
0.00
|
Single Cell Overview of Normalized Expression data |
BioArchLinuxBot
|
2024-05-03 05:30 (UTC) |
r-scnorm
|
1.26.0-1 |
0 |
0.00
|
Normalization of single cell RNA-seq data |
BioArchLinuxBot
|
2024-05-02 21:36 (UTC) |
r-scmeth
|
1.24.0-1 |
0 |
0.00
|
Functions to conduct quality control analysis in methylation data |
BioArchLinuxBot
|
2024-05-03 05:34 (UTC) |
r-scmet
|
1.6.0-1 |
0 |
0.00
|
Bayesian modelling of cell-to-cell DNA methylation heterogeneity |
pekkarr
|
2024-05-02 21:48 (UTC) |
r-scmerge
|
1.20.0-1 |
0 |
0.00
|
scMerge: Merging multiple batches of scRNA-seq data |
BioArchLinuxBot
|
2024-05-03 04:01 (UTC) |
r-scmap
|
1.26.0-1 |
0 |
0.00
|
A tool for unsupervised projection of single cell RNA-seq data |
BioArchLinuxBot
|
2024-05-02 21:29 (UTC) |
r-scmageck
|
1.9.1-4 |
0 |
0.00
|
Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data |
BioArchLinuxBot
|
2023-04-29 05:01 (UTC) |
r-scisi
|
1.68.0-4 |
0 |
0.00
|
In Silico Interactome |
BioArchLinuxBot
|
2022-11-04 06:34 (UTC) |
r-sciplot
|
1.2.0-4 |
0 |
0.00
|
Scientific Graphing Functions for Factorial Designs |
BioArchLinuxBot
|
2024-04-05 18:09 (UTC) |
r-scifer
|
1.6.0-1 |
0 |
0.00
|
Single-Cell Immunoglobulin Filtering of Sanger Sequences |
pekkarr
|
2024-05-03 18:30 (UTC) |
r-scider
|
1.2.0-1 |
0 |
0.00
|
Spatial cell-type inter-correlation by density in R |
pekkarr
|
2024-05-03 09:11 (UTC) |
r-scico
|
1.5.0-1 |
0 |
0.00
|
Colour Palettes Based on the Scientific Colour-Maps |
BioArchLinuxBot
|
2023-08-14 18:02 (UTC) |
r-schot
|
1.16.0-1 |
0 |
0.00
|
single-cell higher order testing |
BioArchLinuxBot
|
2024-05-02 21:27 (UTC) |
r-schex
|
1.18.0-1 |
0 |
0.00
|
Hexbin plots for single cell omics data |
BioArchLinuxBot
|
2024-05-02 23:55 (UTC) |
r-scgps
|
1.18.0-1 |
0 |
0.00
|
A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation) |
BioArchLinuxBot
|
2024-05-02 22:18 (UTC) |
r-scfeatures
|
1.4.0-1 |
0 |
0.00
|
Multi-view representations of single-cell and spatial data for disease outcome prediction |
pekkarr
|
2024-05-03 18:38 (UTC) |