Package Details: fsl 6.0.7.7-1

Git Clone URL: https://aur.archlinux.org/fsl.git (read-only, click to copy)
Package Base: fsl
Description: A comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data
Upstream URL: http://www.fmrib.ox.ac.uk/fsl/
Licenses: custom
Submitter: fishburn
Maintainer: tobac
Last Packager: tobac
Votes: 12
Popularity: 0.000000
First Submitted: 2012-07-02 23:36 (UTC)
Last Updated: 2024-03-03 11:32 (UTC)

Dependencies (1)

Required by (4)

Sources (1)

Latest Comments

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tobac commented on 2023-08-26 11:52 (UTC)

I've decided to include fslinstaller.py in the package as it will probably change more frequently than fsl itself and people would need to reinstall this rather huge package without any real benefit with every fslinstaller hashsum change.

liamtimms commented on 2023-05-08 18:19 (UTC)

Hi, it looks like the installer got updated after this last actual fsl update so the installer now fails the checksum: https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/releases/

keiichiiownsu12 commented on 2023-02-14 20:40 (UTC) (edited on 2023-02-14 21:37 (UTC) by keiichiiownsu12)

just curious, did the latest fsl update add /opt/fsl/bin before /usr/lib in PATH for you? came across a possible problem that I want to make sure isn't due to an error on my part.

update: alright, found the error. in one of my shell configs, I was loading /etc/profile twice by mistake. This caused /etc/profile.d/freesurfer --> $FREESURFER_HOME/FreeSurferEnv.sh to overwrite $PATH with $FSLDIR/bin in the front, leading to the above error.

liamtimms commented on 2023-02-05 16:05 (UTC)

@tobac thanks for this comment I was wondering what was happening with the drastic changes to the PKGBUILD on update. This does look messier from the system standpoint but thanks for your effort in keeping a working PKGBUILD up.

tobac commented on 2023-02-04 20:28 (UTC)

With 6.0.6 FSL rebuilt its installation around its Python-based installer. It has the advantage of being relatively fool-proof, but it's less customizable and so a lot of stuff is downloaded and used by FSL that's already on most people's Arch systems. Still, it is probably much more reliable than their previous build system.

elmiar0246 commented on 2022-05-23 13:58 (UTC)

https://pastebin.com/RjyvwkPV

can't build fdt, can someone help me?

elmiar0246 commented on 2022-05-14 12:45 (UTC) (edited on 2022-05-15 08:31 (UTC) by elmiar0246)

https://controlc.com/07ae5325

Can someone please help me with building fdt successfully?

elmiar0246 commented on 2022-05-14 06:30 (UTC)

make: Target 'all' not remade because of errors.

BUILD LOG CONTENT:

========================= ERROR::Could not make fdt successfully

!!ERROR in BUILD!! Could not make the following projects successfully: fdt

OUTPUT OF CUDA=1 yay -S fsl :

==> Sources are ready. ==> Making package: fsl 6.0.5.1-6 (Saturday 14 May 2022 10:47:58 AM) ==> Checking runtime dependencies... ==> Checking buildtime dependencies... ==> WARNING: Using existing $srcdir/ tree ==> Starting build()... Building projects - see build.log file for progress... Build completed successfully. Building projects - see build.log file for progress... Build completed successfully. Building projects - see build.log file for progress... Build completed successfully. Building projects - see build.log file for progress... Build failed to build all projects.

Been trying this for past 6 days repeatedly!

someone please help me

javierbg commented on 2022-03-10 12:30 (UTC)

The newmat package is broken, the source link is down (503 error). This library seems to be really abandoned, is there any way to remove this dependency?

I commented on the newmat package page a place where you can download the original source to recreate the newmat package manually if anyone needs it.

tobac commented on 2022-02-20 17:26 (UTC) (edited on 2022-02-20 17:27 (UTC) by tobac)

6.0.5.1-6 includes a fix by liamtimms, which might just be the solution to that build problem a lot of users are experiencing. The suspected culprit is implicit parallel compiling (which is now explicitly disabled by supplying "-j 1"). I hope this solves it for good.

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