diff options
| author | BioArchLinuxBot | 2024-08-25 18:03:54 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2024-08-25 18:03:54 +0000 |
| commit | d49fcb42b5328a5bb2fb5d61b62d41a4bde720d1 (patch) | |
| tree | cf03e30703c91aa8f86bd5ee6c4635e13afe7077 | |
| parent | 077548ec7bec6d48ea08f04b3059309b0d3926d3 (diff) | |
| download | aur-adapterremoval.tar.gz | |
[lilac] updated to 2.3.4-2
| -rw-r--r-- | .SRCINFO | 8 | ||||
| -rw-r--r-- | PKGBUILD | 11 | ||||
| -rw-r--r-- | arch-destdir.patch | 53 |
3 files changed, 7 insertions, 65 deletions
@@ -1,6 +1,6 @@ pkgbase = adapterremoval pkgdesc = Remove remnant adapter sequences from High-Throughput Sequencing (HTS) data and trim low quality bases from the 3 prime end - pkgver = 2.3.3 + pkgver = 2.3.4 pkgrel = 2 url = https://github.com/MikkelSchubert/adapterremoval arch = x86_64 @@ -12,9 +12,7 @@ pkgbase = adapterremoval depends = gcc-libs depends = bzip2 depends = zlib - source = adapterremoval-2.3.3.tar.gz::https://github.com/MikkelSchubert/adapterremoval/archive/refs/tags/v2.3.3.tar.gz - source = arch-destdir.patch - sha256sums = a1bdc054319ede085fc8a4e9867c23ffed7df5e97b99d52221b7c587d19418fc - sha256sums = 24f46744805fb8d4a506c05de47d1a2ab77897950057e72db682165ae412a8b3 + source = adapterremoval-2.3.4.tar.gz::https://github.com/MikkelSchubert/adapterremoval/archive/refs/tags/v2.3.4.tar.gz + sha256sums = a4433a45b73ead907aede22ed0c7ea6fbc080f6de6ed7bc00f52173dfb309aa1 pkgname = adapterremoval @@ -1,7 +1,7 @@ # Maintainer: bipin Kumar <kbipinkumar@pm.me> pkgname=adapterremoval -pkgver=2.3.3 +pkgver=2.3.4 pkgrel=2 pkgdesc='Remove remnant adapter sequences from High-Throughput Sequencing (HTS) data and trim low quality bases from the 3 prime end' arch=('x86_64') @@ -10,19 +10,16 @@ license=('GPL3') depends=('glibc' 'gcc-libs' 'bzip2' 'zlib') makedepends=('python-sphinx' 'libdeflate' 'isa-l') source=(${pkgname}-${pkgver}.tar.gz::https://github.com/MikkelSchubert/adapterremoval/archive/refs/tags/v${pkgver}.tar.gz - 'arch-destdir.patch' ) -sha256sums=('a1bdc054319ede085fc8a4e9867c23ffed7df5e97b99d52221b7c587d19418fc' - '24f46744805fb8d4a506c05de47d1a2ab77897950057e72db682165ae412a8b3') +sha256sums=('a4433a45b73ead907aede22ed0c7ea6fbc080f6de6ed7bc00f52173dfb309aa1') prepare() { - cp *.patch ${pkgname}-${pkgver} cd "${pkgname}-${pkgver}" - # patch Makefile to be inline with archlinux build guidelines - patch -p1 < arch-destdir.patch + sed -i '6s/:/?/' Makefile } build() { cd "${pkgname}-${pkgver}" + export PREFIX="/usr" make everything } diff --git a/arch-destdir.patch b/arch-destdir.patch deleted file mode 100644 index aa8194d40496..000000000000 --- a/arch-destdir.patch +++ /dev/null @@ -1,53 +0,0 @@ ---- a/Makefile 2023-04-01 23:03:38.896807602 +0530 -+++ b/Makefile 2023-04-02 00:26:38.886519015 +0530 -@@ -3,10 +3,10 @@ - # - - # Installation destinations --PREFIX := /usr/local -+PREFIX := /usr - - # Default compilation flags --CXXFLAGS := ${CXXFLAGS} -std=c++11 -O3 -+CXXFLAGS := ${CXXFLAGS} -std=c++11 -O2 - - ## Optional features; comment out or set to value other than 'yes' to disable - -@@ -20,7 +20,7 @@ - DEBUG_BUILD := no - - # Include coverage instrumentation in build --COVERAGE := no -+COVERAGE := yes - - ############################################################################### - # Makefile internals. Normally you do not need to touch these. -@@ -111,20 +111,20 @@ - install: build/$(PROG) - @echo $(COLOR_GREEN)"Installing AdapterRemoval .."$(COLOR_END) - @echo $(COLOR_GREEN)" .. binary into ${PREFIX}/bin/"$(COLOR_END) -- $(QUIET) $(MKDIR) ${PREFIX}/bin/ -- $(QUIET) $(INSTALLEXE) build/$(PROG) ${PREFIX}/bin/ -+ $(QUIET) $(MKDIR) $(DESTDIR)${PREFIX}/bin/ -+ $(QUIET) $(INSTALLEXE) build/$(PROG) $(DESTDIR)${PREFIX}/bin/ - - @echo $(COLOR_GREEN)" .. man-page into ${PREFIX}/share/man/man1/"$(COLOR_END) -- $(QUIET) $(MKDIR) ${PREFIX}/share/man/man1/ -- $(QUIET) $(INSTALLDOC) $(PROG).1 ${PREFIX}/share/man/man1/ -+ $(QUIET) $(MKDIR) $(DESTDIR)${PREFIX}/share/man/man1/ -+ $(QUIET) $(INSTALLDOC) $(PROG).1 $(DESTDIR)${PREFIX}/share/man/man1/ - - @echo $(COLOR_GREEN)" .. README into ${PREFIX}/share/adapterremoval/"$(COLOR_END) -- $(QUIET) $(MKDIR) ${PREFIX}/share/adapterremoval/ -- $(QUIET) $(INSTALLDOC) README.md ${PREFIX}/share/adapterremoval/ -+ $(QUIET) $(MKDIR) $(DESTDIR)${PREFIX}/share/doc/adapterremoval/ -+ $(QUIET) $(INSTALLDOC) README.md $(DESTDIR)${PREFIX}/share/doc/adapterremoval/ - - @echo $(COLOR_GREEN)" .. examples into ${PREFIX}/share/adapterremoval/examples/"$(COLOR_END) -- $(QUIET) $(MKDIR) ${PREFIX}/share/adapterremoval/examples/ -- $(QUIET) $(INSTALLDAT) examples/*.* ${PREFIX}/share/adapterremoval/examples/ -+ $(QUIET) $(MKDIR) $(DESTDIR)${PREFIX}/share/adapterremoval/examples/ -+ $(QUIET) $(INSTALLDAT) examples/*.* $(DESTDIR)${PREFIX}/share/adapterremoval/examples/ - - static: build/$(LIBNAME).a - |