init

2 files changed, 229 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..5c5a678a2679
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,50 @@
+pkgbase = pars-win
+	pkgdesc = free parsimony programs
+	pkgver = 2014.03.10
+	pkgrel = 0
+	url = https://www.lillo.org.ar/phylogeny/Nona-PeeWee/readme.htm
+	arch = x86_64
+	license = custom
+	makedepends = unrar
+	makedepends = dosbox
+	makedepends = wine
+	source = https://www.lillo.org.ar/phylogeny/Nona-PeeWee/Pars-win.exe
+	sha256sums = 89a5eeaeef53aefbefdc9a7344b5b0e996ed1465987452045297d03d89126fce
+
+pkgname = nona-win
+	pkgdesc = a bastard son of Pee-Wee
+	depends = wine
+	depends = bash
+
+pkgname = pee-wee
+	pkgdesc = (P)arsimony and (I)mplied (WE)ights
+	depends = wine
+	depends = bash
+	provides = pee-wee
+	provides = piwe
+
+pkgname = xpiwe
+	pkgdesc = Pee-Wee with Floating Point Precision
+	depends = wine
+	depends = bash
+
+pkgname = slf-wt
+	pkgdesc = A prototype program implementing character state reconstructions under non-lineal functions of the state changes (Pee-Wee with SeLF-WeighTed) https://doi.org/10.1006/clad.1997.0043
+	depends = wine
+	depends = bash
+
+pkgname = spa
+	pkgdesc = Sankoff Parsimony Analysis https://doi.org/10.1006/clad.1998.0068
+	depends = wine
+	depends = bash
+
+pkgname = phast-win
+	pkgdesc = PHylogenetic Analysis for Sankoff Transformations https://doi.org/10.1006/clad.1998.0068
+	depends = wine
+	depends = bash
+	provides = phast
+
+pkgname = pars-win-extra
+	pkgdesc = Parsimony programs extra software from Pablo A. Goloboff
+	depends = dosbox
+	depends = bash
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..78220aaf865b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,179 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+pkgbase=pars-win
+pkgname=('nona-win' 'pee-wee' 'xpiwe' 'slf-wt' 'spa' 'phast-win' 'pars-win-extra')
+pkgver=2014.03.10
+pkgrel=0
+pkgdesc="free parsimony programs"
+arch=('x86_64')
+url="https://www.lillo.org.ar/phylogeny/Nona-PeeWee/readme.htm"
+license=('custom')
+makedepends=('unrar' 'dosbox' 'wine')
+source=(https://www.lillo.org.ar/phylogeny/Nona-PeeWee/Pars-win.exe)
+sha256sums=('89a5eeaeef53aefbefdc9a7344b5b0e996ed1465987452045297d03d89126fce')
+
+build(){
+  cd $srcdir
+  # extract files
+  unrar x Pars-win.exe
+  # write verify.bat 
+  cat << EOF > verify.bat
+wconvert winona yatasto BioArchLinux
+wconvert winpiwe yatasto BioArchLinux
+wconvert winxpiwe yatasto BioArchLinux
+
+wconvert winspa BODEGON BioArchLinux
+wconvert winphast BODEGON BioArchLinux
+
+wconvert winsl surubies BioArchLinux
+
+exit
+EOF
+  # verify
+  env SDL_VIDEODRIVER=dummy wine verify.bat
+  # generate pkg shell
+  echo "cd /usr/share/pars-win" > basic
+for EXE in ONA  PHAST  PIWE  SL  SPA  XPIWE
+do
+  cp basic WIN$EXE
+  echo "wine WIN$EXE.EXE" >> WIN$EXE
+  chmod +x WIN$EXE 
+done
+  # two basic dos programs
+for EXE in CONS FQ SCG
+do
+  echo "dosbox /usr/share/$pkgbase/$EXE.EXE" >> $EXE
+  chmod +x $EXE 
+done
+}
+
+package_nona-win(){
+  depends=('wine' 'bash')
+  pkgdesc="a  bastard  son  of  Pee-Wee"
+  cd $srcdir
+  _pkg=ONA
+  _doc=NONA
+  # install main
+  install -Dm 755 WIN$_pkg.EXE $pkgdir/usr/share/$pkgbase/WIN$_pkg.EXE
+  install -Dm 644 $_doc.DOC $pkgdir/usr/share/$pkgbase/$_doc.DOC
+  # install shell 
+  install -Dm 755 WIN$_pkg $pkgdir/usr/bin/WIN$_pkg 
+  # install doc
+  mkdir -p $pkgdir/usr/share/doc/$pkgbase
+  ln -s /usr/share/$pkgbase/$_doc.DOC $pkgdir/usr/share/doc/$pkgbase/$_doc.DOC
+}
+
+package_pee-wee(){
+  depends=('wine' 'bash')
+  pkgdesc="(P)arsimony and (I)mplied (WE)ights"
+  provides=('pee-wee' 'piwe')
+  cd $srcdir
+  _pkg=PIWE
+  _doc=$_pkg
+  # install main
+  install -Dm 755 WIN$_pkg.EXE $pkgdir/usr/share/$pkgbase/WIN$_pkg.EXE
+  install -Dm 644 $_doc.DOC $pkgdir/usr/share/$pkgbase/$_doc.DOC
+  # install shell 
+  install -Dm 755 WIN$_pkg $pkgdir/usr/bin/WIN$_pkg 
+  # install doc
+  mkdir -p $pkgdir/usr/share/doc/$pkgbase
+  ln -s /usr/share/$pkgbase/$_doc.DOC $pkgdir/usr/share/doc/$pkgbase/$_doc.DOC
+}
+
+package_xpiwe(){
+  depends=('wine' 'bash')
+  pkgdesc="Pee-Wee with Floating Point Precision"
+  cd $srcdir
+  _pkg=XPIWE
+  _doc=$_pkg
+  # install main
+  install -Dm 755 WIN$_pkg.EXE $pkgdir/usr/share/$pkgbase/WIN$_pkg.EXE
+  install -Dm 644 $_doc.DOC $pkgdir/usr/share/$pkgbase/$_doc.DOC
+  # install shell 
+  install -Dm 755 WIN$_pkg $pkgdir/usr/bin/WIN$_pkg 
+  # install doc
+  mkdir -p $pkgdir/usr/share/doc/$pkgbase
+  ln -s /usr/share/$pkgbase/$_doc.DOC $pkgdir/usr/share/doc/$pkgbase/$_doc.DOC
+}
+
+package_slf-wt(){
+  depends=('wine' 'bash')
+  pkgdesc="A prototype program implementing character state reconstructions under non-lineal functions of the state changes \
+  (Pee-Wee with SeLF-WeighTed) \
+  https://doi.org/10.1006/clad.1997.0043"
+  cd $srcdir
+  _pkg=SL
+  _doc=$_pkg
+  # install main
+  install -Dm 755 WIN$_pkg.EXE $pkgdir/usr/share/$pkgbase/WIN$_pkg.EXE
+  install -Dm 644 $_doc.DOC $pkgdir/usr/share/$pkgbase/$_doc.DOC
+  # install shell 
+  install -Dm 755 WIN$_pkg $pkgdir/usr/bin/WIN$_pkg 
+  # install doc
+  mkdir -p $pkgdir/usr/share/doc/$pkgbase
+  ln -s /usr/share/$pkgbase/$_doc.DOC $pkgdir/usr/share/doc/$pkgbase/$_doc.DOC
+}
+
+package_spa(){
+  depends=('wine' 'bash')
+  pkgdesc="Sankoff Parsimony Analysis \
+  https://doi.org/10.1006/clad.1998.0068"
+  cd $srcdir
+  _pkg=SPA
+  _doc=$_pkg
+  # install main
+  install -Dm 755 WIN$_pkg.EXE $pkgdir/usr/share/$pkgbase/WIN$_pkg.EXE
+  install -Dm 644 $_doc.DOC $pkgdir/usr/share/$pkgbase/$_doc.DOC
+  # install shell 
+  install -Dm 755 WIN$_pkg $pkgdir/usr/bin/WIN$_pkg 
+  # install doc
+  mkdir -p $pkgdir/usr/share/doc/$pkgbase
+  ln -s /usr/share/$pkgbase/$_doc.DOC $pkgdir/usr/share/doc/$pkgbase/$_doc.DOC
+}
+
+package_phast-win(){
+  depends=('wine' 'bash')
+  pkgdesc="PHylogenetic Analysis for Sankoff Transformations \
+  https://doi.org/10.1006/clad.1998.0068"
+  provides=('phast')
+  cd $srcdir
+  _pkg=PHAST
+  _doc=$_pkg
+  # install main
+  install -Dm 755 WIN$_pkg.EXE $pkgdir/usr/share/$pkgbase/WIN$_pkg.EXE
+  install -Dm 644 $_doc.DOC $pkgdir/usr/share/$pkgbase/$_doc.DOC
+  # install shell
+  install -Dm 755 WIN$_pkg $pkgdir/usr/bin/WIN$_pkg
+  # install doc
+  mkdir -p $pkgdir/usr/share/doc/$pkgbase
+  ln -s /usr/share/$pkgbase/$_doc.DOC $pkgdir/usr/share/doc/$pkgbase/$_doc.DOC
+}
+
+package_pars-win-extra(){
+  depends=('dosbox' 'bash')
+  pkgdesc="Parsimony programs extra software from Pablo A. Goloboff"
+  cd $srcdir
+  # install shell and main 
+  for EXE in CONS FQ SCG
+do
+  install -Dm 755 $EXE $pkgdir/usr/bin/$EXE
+  install -Dm 755 $EXE.EXE $pkgdir/usr/share/$pkgbase/$EXE.EXE
+done
+  # install doc
+  mkdir -p $pkgdir/usr/share/doc/$pkgbase
+  for DOC in PROGRAMS.DOC "README_!.DOC"
+do
+  install -Dm 644 $DOC $pkgdir/usr/share/$pkgbase/$DOC
+  ln -s /usr/share/$pkgbase/$DOC $pkgdir/usr/share/doc/$pkgbase/$DOC
+done
+  # run
+for RUN in $(ls *.RUN)
+do
+  install -Dm 644 $RUN $pkgdir/usr/share/$pkgbase/scripts/$RUN
+done
+  # dat
+for DAT in $(ls *.DAT)
+do
+  install -Dm 644 $DAT $pkgdir/usr/share/$pkgbase/data/$DAT
+done
+
+}