diff options
| author | PumpkinCheshire | 2021-07-02 15:37:16 +0800 |
|---|---|---|
| committer | PumpkinCheshire | 2021-07-02 15:37:16 +0800 |
| commit | 66c3ca17daf13d5cc6f7a91a2cf3f019b9835e52 (patch) | |
| tree | c50fe0c0d344b155e54f5282b72ee7e04cd3568f | |
| download | aur-pilon.tar.gz | |
init
| -rw-r--r-- | .SRCINFO | 17 | ||||
| -rw-r--r-- | .gitignore | 4 | ||||
| -rw-r--r-- | PKGBUILD | 34 |
3 files changed, 55 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..75400a847ec3 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,17 @@ +pkgbase = pilon + pkgdesc = Pilon is an automated genome assembly improvement and variant detection tool. + pkgver = 1.24 + pkgrel = 1 + url = https://github.com/broadinstitute/pilon + arch = any + license = GPL2 + makedepends = sbt + makedepends = sh + depends = java-runtime + provides = pilon + conflicts = pilon-bin + conflicts = pilon-git + source = https://github.com/broadinstitute/pilon/archive/refs/tags/v1.24.tar.gz + b2sums = f715aa70f29d00a470cdafefcae857627fd9e857466f2cebd1f842714f09b09022871db9ea6c75dc7e7b25fc4b4a5838dad3349740c3e5d330e402bd6c1410c1 + +pkgname = pilon diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..018a3de08144 --- /dev/null +++ b/.gitignore @@ -0,0 +1,4 @@ +* +!PKGBUILD +!.SRCINFO +!.gitignore diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..1e5ae158e555 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,34 @@ +# Maintainer: PumpkinCheshire <me at pumpkincheshire dot top> + +pkgname=pilon +pkgver=1.24 +pkgrel=1 +pkgdesc="Pilon is an automated genome assembly improvement and variant detection tool." +arch=('any') +url="https://github.com/broadinstitute/pilon" +license=('GPL2') +depends=('java-runtime') +makedepends=('sbt' 'sh') +provides=("pilon") +conflicts=("pilon-bin" "pilon-git") +source=("$url/archive/refs/tags/v$pkgver.tar.gz") +b2sums=('f715aa70f29d00a470cdafefcae857627fd9e857466f2cebd1f842714f09b09022871db9ea6c75dc7e7b25fc4b4a5838dad3349740c3e5d330e402bd6c1410c1') + +build() { + cd $srcdir/$pkgname-$pkgver/ + + sbt $* assembly + +} + +package() { + install -Dm755 "$srcdir/$pkgname-$pkgver/target/scala-2.13/$pkgname-assembly-$pkgver.jar" -t "$pkgdir/usr/share/java/$pkgname/" + + mkdir -p $pkgdir/usr/bin/ + echo "#!/bin/sh" >>$pkgdir/usr/bin/pilon + echo "exec /usr/bin/java -jar '/usr/share/java/$pkgname/$pkgname-assembly-$pkgver.jar' \"\$@\"" >>$pkgdir/usr/bin/pilon + + chmod -R 755 $pkgdir/usr/bin/ + + install -Dm644 "${srcdir}/$pkgname-$pkgver/LICENSE" "$pkgdir/usr/share/licenses/$pkgname/LICENSE" +} |