diff options
| author | Grey Christoforo | 2020-11-01 12:44:22 +0100 |
|---|---|---|
| committer | Grey Christoforo | 2020-11-01 12:44:22 +0100 |
| commit | 1331bd7976a3f14d14a6c8204d082d9d42beaa34 (patch) | |
| tree | 75450748c020527e9d4ef261c33c03ca545d1242 | |
| download | aur-python-macs.tar.gz | |
move macs to python3
| -rw-r--r-- | .SRCINFO | 16 | ||||
| -rw-r--r-- | .gitignore | 4 | ||||
| -rw-r--r-- | PKGBUILD | 34 |
3 files changed, 54 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..edce77b8f76e --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,16 @@ +pkgbase = python-macs + pkgdesc = MACS -- Model-based Analysis of ChIP-Seq + pkgver = 2.2.7.1 + pkgrel = 1 + url = https://macs3-project.github.io/MACS/ + arch = x86_64 + license = BSD + makedepends = python-setuptools + depends = python-numpy + conflicts = python2-macs2 + replaces = python2-macs2 + source = https://github.com/macs3-project/MACS/archive/v2.2.7.1.tar.gz + md5sums = 3b669e6b847e5d2edd9b9ab4b58edae9 + +pkgname = python-macs + diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..207cdf2b7f96 --- /dev/null +++ b/.gitignore @@ -0,0 +1,4 @@ +*.tar.gz +*.tar.xz +/src +/pkg diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..2c6e692bf966 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,34 @@ +# $Id$ +# Maintainer: Grey Christoforo <grey at christoforo dot net> + +pkgname=python-macs +pkgver=2.2.7.1 +pkgrel=1 +pkgdesc="MACS -- Model-based Analysis of ChIP-Seq" +arch=('x86_64') +url="https://macs3-project.github.io/MACS/" +license=('BSD') +conflicts=('python2-macs2') +replaces=('python2-macs2') +depends=('python-numpy') +makedepends=('python-setuptools') +source=("https://github.com/macs3-project/MACS/archive/v${pkgver}.tar.gz") +md5sums=('3b669e6b847e5d2edd9b9ab4b58edae9') + +prepare() { + cd "MACS-${pkgver}" + + # don't call pip + curl https://github.com/greyltc/MACS/commit/c39b55d8dfa6d57cb4d11e37b7f0947f7629702e.patch | patch -p1 +} + +build() { + cd "MACS-${pkgver}" + python setup.py build +} + +package(){ + cd "MACS-${pkgver}" + python setup.py install --root="${pkgdir}" --optimize=1 --skip-build + install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE" +} |