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authorBioArchLinuxBot2024-05-10 18:12:52 +0000
committerBioArchLinuxBot2024-05-10 18:12:52 +0000
commit014feebfab1fbcb3652c8069a255782bc07e2047 (patch)
tree33896ff5d2c1925ab5c7bb1628a38c2f509e26d4
parentd51a10ba0f9f6db0fe2a2a597a922598b8253bcb (diff)
downloadaur-r-bionar.tar.gz
[lilac] updated to 1.6.0-1
-rw-r--r--.SRCINFO11
-rw-r--r--PKGBUILD16
-rw-r--r--fix-tests.patch26
3 files changed, 8 insertions, 45 deletions
diff --git a/.SRCINFO b/.SRCINFO
index ca756df22ce2..f0d05319f4ff 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
pkgbase = r-bionar
pkgdesc = Biological Network Analysis in R
- pkgver = 1.4.4
+ pkgver = 1.6.0
pkgrel = 1
url = https://bioconductor.org/packages/BioNAR
arch = any
@@ -40,11 +40,8 @@ pkgbase = r-bionar
optdepends = r-rmarkdown
optdepends = r-testthat
optdepends = r-vdiffr
- source = https://bioconductor.org/packages/release/bioc/src/contrib/BioNAR_1.4.4.tar.gz
- source = fix-tests.patch
- md5sums = 60ea801489d5db3a2bb2e00d1acc1056
- md5sums = 4a0d1366b4a7d786d07d1553c9a7899e
- b2sums = 9a2a1a98ccff8e9d8054295f5b53321dcd03f9d996a1931f4e6a51c98af378ac2d0e0ef9a1ff51e43b15ff795ac523305037197d6b0e63ddd2f4aeeb28f6ff34
- b2sums = 5bcc25f82c45ce8442351f73a851f34bf2c76b286dd708141882f928876d02fba213e8760146cd3115d298985aa062fb67d9a5d89ea7a62687d65fdfb3349a84
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/BioNAR_1.6.0.tar.gz
+ md5sums = 09f2f54ad370dfbd2c42d2921f886102
+ b2sums = 122ef665600aeefde372364f7e0b7234090cf95248e5aefbcf10225e250db2a0e2d14239965f371dd3979b5ef7e157d89294428b749f62c13b6b8b495ae0f92f
pkgname = r-bionar
diff --git a/PKGBUILD b/PKGBUILD
index c3f074fb0c95..b2dcb41cb8d9 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,7 +1,7 @@
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=BioNAR
-_pkgver=1.4.4
+_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
@@ -50,17 +50,9 @@ optdepends=(
r-testthat
r-vdiffr
)
-source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
- "fix-tests.patch")
-md5sums=('60ea801489d5db3a2bb2e00d1acc1056'
- '4a0d1366b4a7d786d07d1553c9a7899e')
-b2sums=('9a2a1a98ccff8e9d8054295f5b53321dcd03f9d996a1931f4e6a51c98af378ac2d0e0ef9a1ff51e43b15ff795ac523305037197d6b0e63ddd2f4aeeb28f6ff34'
- '5bcc25f82c45ce8442351f73a851f34bf2c76b286dd708141882f928876d02fba213e8760146cd3115d298985aa062fb67d9a5d89ea7a62687d65fdfb3349a84')
-
-prepare() {
- # fix test snapshots
- patch -Np1 -i fix-tests.patch
-}
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('09f2f54ad370dfbd2c42d2921f886102')
+b2sums=('122ef665600aeefde372364f7e0b7234090cf95248e5aefbcf10225e250db2a0e2d14239965f371dd3979b5ef7e157d89294428b749f62c13b6b8b495ae0f92f')
build() {
mkdir build
diff --git a/fix-tests.patch b/fix-tests.patch
deleted file mode 100644
index 442ed661adc3..000000000000
--- a/fix-tests.patch
+++ /dev/null
@@ -1,26 +0,0 @@
-diff --git a/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg b/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg
-index eacd23f..4feb787 100644
---- a/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg
-+++ b/BioNAR/tests/testthat/_snaps/bridgeness/karatebridgenessplot.svg
-@@ -18,7 +18,7 @@
- </clipPath>
- </defs>
- <g clip-path='url(#cpMC4wMHw3MjAuMDB8MC4wMHw1NzYuMDA=)'>
--<rect x='0.00' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' />
-+<rect x='0.000000000000064' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' />
- </g>
- <defs>
- <clipPath id='cpNTQuOTF8NzE0LjUyfDIyLjc4fDUzMC4zMw=='>
-diff --git a/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg b/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg
-index de47e4c..7ef78e1 100644
---- a/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg
-+++ b/BioNAR/tests/testthat/_snaps/bridgeness/presynbridgenessplot.svg
-@@ -18,7 +18,7 @@
- </clipPath>
- </defs>
- <g clip-path='url(#cpMC4wMHw3MjAuMDB8MC4wMHw1NzYuMDA=)'>
--<rect x='0.00' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' />
-+<rect x='0.000000000000064' y='0.00' width='720.00' height='576.00' style='stroke-width: 1.07; stroke: #FFFFFF; fill: #FFFFFF;' />
- </g>
- <defs>
- <clipPath id='cpNTQuOTF8NzE0LjUyfDIyLjc4fDUzMC4zMw=='>