add r-deconstructsigs

2 files changed, 50 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..8be863d7b6b4
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,17 @@
+pkgbase = r-deconstructsigs
+	pkgdesc = Identifies Signatures Present in a Tumor Sample
+	pkgver = 1.8.0
+	pkgrel = 3
+	url = https://cran.r-project.org/package=deconstructSigs
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-bsgenome
+	depends = r-bsgenome.hsapiens.ucsc.hg19
+	depends = r-genomeinfodb
+	depends = r-reshape2
+	optdepends = r-variantannotation
+	source = https://cran.r-project.org/src/contrib/deconstructSigs_1.8.0.tar.gz
+	sha256sums = 2ab8f6c0fd674bd270035ba2112f1a79d63de1155ba9698c4169c92196059d04
+
+pkgname = r-deconstructsigs
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9fbdafde5ea3
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,33 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=deconstructSigs
+_pkgver=1.8.0
+pkgname=r-${_pkgname,,}
+pkgver=1.8.0
+pkgrel=3
+pkgdesc='Identifies Signatures Present in a Tumor Sample'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-bsgenome
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-genomeinfodb
+  r-reshape2
+)
+optdepends=(
+  r-variantannotation
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('2ab8f6c0fd674bd270035ba2112f1a79d63de1155ba9698c4169c92196059d04')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: