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| author | Sukanka | 2022-06-06 14:30:22 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 14:30:22 +0800 |
| commit | fa67474252ab3653d669d1690514b869295c5e03 (patch) | |
| tree | ab13e3096b2189250ffee4bacda92cc28f898f0e | |
| download | aur-r-mafdb.1kgenomes.phase3.hs37d5.tar.gz | |
add r-mafdb.1kgenomes.phase3.hs37d5
| -rw-r--r-- | .SRCINFO | 19 | ||||
| -rw-r--r-- | PKGBUILD | 35 |
2 files changed, 54 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..765d3a95cea4 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,19 @@ +pkgbase = r-mafdb.1kgenomes.phase3.hs37d5 + pkgdesc = Minor allele frequency data from 1000 Genomes Phase 3 for hs37d5 + pkgver = 3.10.0 + pkgrel = 3 + url = https://bioconductor.org/packages/MafDb.1Kgenomes.phase3.hs37d5 + arch = any + license = Artistic2.0 + depends = r + depends = r-bsgenome + depends = r-genomeinfodb + depends = r-genomicranges + depends = r-genomicscores + depends = r-iranges + depends = r-s4vectors + optdepends = r-snplocs.hsapiens.dbsnp144.grch37 + source = https://bioconductor.org/packages/release/data/annotation/src/contrib/MafDb.1Kgenomes.phase3.hs37d5_3.10.0.tar.gz + sha256sums = 0d997b1985eaaed3954d314dee3d7e2ef4423615464c8ab5fb7add35fceb4bb0 + +pkgname = r-mafdb.1kgenomes.phase3.hs37d5 diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..8b019b15bf4d --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,35 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=MafDb.1Kgenomes.phase3.hs37d5 +_pkgver=3.10.0 +pkgname=r-${_pkgname,,} +pkgver=3.10.0 +pkgrel=3 +pkgdesc='Minor allele frequency data from 1000 Genomes Phase 3 for hs37d5' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-bsgenome + r-genomeinfodb + r-genomicranges + r-genomicscores + r-iranges + r-s4vectors +) +optdepends=( + r-snplocs.hsapiens.dbsnp144.grch37 +) +source=("https://bioconductor.org/packages/release/data/annotation/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('0d997b1985eaaed3954d314dee3d7e2ef4423615464c8ab5fb7add35fceb4bb0') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |