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authorBioArchLinuxBot2024-05-07 12:12:27 +0000
committerBioArchLinuxBot2024-05-07 12:12:27 +0000
commit4c380a8a796b2b078351c1f6697fbf3b815f0338 (patch)
treea55741e757b15ccf7d4e1e260966c22b47f3d6c4
parent7dae2e0cbb0498fd82050c8a812eb840a16ecf9c (diff)
downloadaur-r-metaseqr2.tar.gz
[lilac] updated to 1.16.0-1
-rw-r--r--.SRCINFO14
-rw-r--r--PKGBUILD28
2 files changed, 21 insertions, 21 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 6e2555471f24..7bf5e7ffc347 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,13 +1,11 @@
pkgbase = r-metaseqr2
pkgdesc = An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
- pkgver = 1.14.0
+ pkgver = 1.16.0
pkgrel = 1
url = https://bioconductor.org/packages/metaseqR2
arch = x86_64
- license = GPL
- depends = r
+ license = GPL-3.0-or-later
depends = r-absseq
- depends = r-bayseq
depends = r-biobase
depends = r-biocgenerics
depends = r-biocparallel
@@ -47,17 +45,19 @@ pkgbase = r-metaseqr2
depends = r-stringr
depends = r-summarizedexperiment
depends = r-survcomp
+ depends = r-txdbmaker
depends = r-venndiagram
depends = r-vsn
depends = r-yaml
depends = r-zoo
optdepends = r-biocmanager
+ optdepends = r-biocstyle
optdepends = r-bsgenome
optdepends = r-knitr
optdepends = r-rmysql
optdepends = r-runit
- optdepends = r-tcc
- source = https://bioconductor.org/packages/release/bioc/src/contrib/metaseqR2_1.14.0.tar.gz
- sha256sums = c590809d04fdcd8b7f3de13f531cfbc60b2aa47ab697926b1fcfc8683652e9e9
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/metaseqR2_1.16.0.tar.gz
+ md5sums = a406f8ff6d42c145b6b2bc0982d9faa4
+ b2sums = 1967c3caf3b366a9ec9f26a7e154a8313b7d809e6784179df3d9d230c15dadd3f1012873f3b7c49a20b11e4f11fa9a1be30f6aa12343bcb73aa5e36e18fc743f
pkgname = r-metaseqr2
diff --git a/PKGBUILD b/PKGBUILD
index c2f41aeb3a58..ebf314d02b3e 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,18 +1,16 @@
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=metaseqR2
-_pkgver=1.14.0
+_pkgver=1.16.0
pkgname=r-${_pkgname,,}
-pkgver=1.14.0
+pkgver=${_pkgver//-/.}
pkgrel=1
-pkgdesc='An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms'
-arch=('x86_64')
-url="https://bioconductor.org/packages/${_pkgname}"
-license=('GPL')
+pkgdesc="An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms"
+arch=(x86_64)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('GPL-3.0-or-later')
depends=(
- r
r-absseq
- r-bayseq
r-biobase
r-biocgenerics
r-biocparallel
@@ -52,6 +50,7 @@ depends=(
r-stringr
r-summarizedexperiment
r-survcomp
+ r-txdbmaker
r-venndiagram
r-vsn
r-yaml
@@ -59,21 +58,22 @@ depends=(
)
optdepends=(
r-biocmanager
+ r-biocstyle
r-bsgenome
r-knitr
r-rmysql
r-runit
- r-tcc
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('c590809d04fdcd8b7f3de13f531cfbc60b2aa47ab697926b1fcfc8683652e9e9')
+md5sums=('a406f8ff6d42c145b6b2bc0982d9faa4')
+b2sums=('1967c3caf3b366a9ec9f26a7e154a8313b7d809e6784179df3d9d230c15dadd3f1012873f3b7c49a20b11e4f11fa9a1be30f6aa12343bcb73aa5e36e18fc743f')
build() {
- R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+ mkdir build
+ R CMD INSTALL -l build "$_pkgname"
}
package() {
- install -dm0755 "${pkgdir}/usr/lib/R/library"
- cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+ install -d "$pkgdir/usr/lib/R/library"
+ cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
-# vim:set ts=2 sw=2 et: