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author | BioArchLinuxBot | 2024-05-03 18:14:15 +0000 |
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committer | BioArchLinuxBot | 2024-05-03 18:14:15 +0000 |
commit | 13aec716abbf4a6f42f2e5d195cbd582b3b638a4 (patch) | |
tree | 5ebc03d77c43bf4db96fa239ef4dc33e727196c9 | |
parent | 1af9de4aa35fcaff56e1fbd0ec8aa3420c9a9b5b (diff) | |
download | aur-r-orfik.tar.gz |
[lilac] updated to 1.24.0-1
-rw-r--r-- | .SRCINFO | 10 | ||||
-rw-r--r-- | PKGBUILD | 28 |
2 files changed, 22 insertions, 16 deletions
@@ -1,12 +1,12 @@ pkgbase = r-orfik pkgdesc = Open Reading Frames in Genomics - pkgver = 1.22.2 + pkgver = 1.24.0 pkgrel = 1 url = https://bioconductor.org/packages/ORFik arch = x86_64 license = MIT - depends = r depends = r-annotationdbi + depends = r-biocfilecache depends = r-biocgenerics depends = r-biocparallel depends = r-biomart @@ -35,6 +35,7 @@ pkgbase = r-orfik depends = r-rtracklayer depends = r-s4vectors depends = r-summarizedexperiment + depends = r-txdbmaker depends = r-withr depends = r-xml depends = r-xml2 @@ -43,7 +44,8 @@ pkgbase = r-orfik optdepends = r-knitr optdepends = r-rmarkdown optdepends = r-testthat - source = https://bioconductor.org/packages/release/bioc/src/contrib/ORFik_1.22.2.tar.gz - sha256sums = fe00c50c039695f803e23cfbf65f67154d77523391627bbd22c6ab953063af73 + source = https://bioconductor.org/packages/release/bioc/src/contrib/ORFik_1.24.0.tar.gz + md5sums = b0f07c686b2a4f5688ef8e4bc86ba8d4 + b2sums = b4cf62fe20bc03be19a4b1536fefc8c93bdbedae13bbad32c8857b782dea51e51d4ad845aa27ac2457ac58a3da813f440d956787bb1325ceeba4e5a0e7a19eb0 pkgname = r-orfik @@ -1,17 +1,17 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=ORFik -_pkgver=1.22.2 +_pkgver=1.24.0 pkgname=r-${_pkgname,,} -pkgver=1.22.2 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Open Reading Frames in Genomics' -arch=('x86_64') -url="https://bioconductor.org/packages/${_pkgname}" +pkgdesc="Open Reading Frames in Genomics" +arch=(x86_64) +url="https://bioconductor.org/packages/$_pkgname" license=('MIT') depends=( - r r-annotationdbi + r-biocfilecache r-biocgenerics r-biocparallel r-biomart @@ -40,6 +40,7 @@ depends=( r-rtracklayer r-s4vectors r-summarizedexperiment + r-txdbmaker r-withr r-xml r-xml2 @@ -52,15 +53,18 @@ optdepends=( r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('fe00c50c039695f803e23cfbf65f67154d77523391627bbd22c6ab953063af73') +md5sums=('b0f07c686b2a4f5688ef8e4bc86ba8d4') +b2sums=('b4cf62fe20bc03be19a4b1536fefc8c93bdbedae13bbad32c8857b782dea51e51d4ad845aa27ac2457ac58a3da813f440d956787bb1325ceeba4e5a0e7a19eb0') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" - install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" } -# vim:set ts=2 sw=2 et: |