Version 1.13.0

2 files changed, 136 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..9d6101430405
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,55 @@
+pkgbase = r-signac
+	pkgdesc = Analysis of Single-Cell Chromatin Data
+	pkgver = 1.13.0
+	pkgrel = 1
+	url = https://cran.r-project.org/package=Signac
+	arch = x86_64
+	license = MIT
+	checkdepends = r-testthat
+	depends = r-biocgenerics
+	depends = r-data.table
+	depends = r-dplyr
+	depends = r-fastmatch
+	depends = r-future
+	depends = r-future.apply
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-iranges
+	depends = r-irlba
+	depends = r-lifecycle
+	depends = r-patchwork
+	depends = r-pbapply
+	depends = r-rcpp
+	depends = r-rcpproll
+	depends = r-rlang
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-scales
+	depends = r-seuratobject
+	depends = r-stringi
+	depends = r-tidyr
+	depends = r-tidyselect
+	depends = r-vctrs
+	depends = zlib
+	optdepends = r-biostrings
+	optdepends = r-biovizbase
+	optdepends = r-bsgenome
+	optdepends = r-chromvar
+	optdepends = r-ggforce
+	optdepends = r-ggrepel
+	optdepends = r-ggseqlogo
+	optdepends = r-lsa
+	optdepends = r-miniui
+	optdepends = r-motifmatchr
+	optdepends = r-rtracklayer
+	optdepends = r-seurat
+	optdepends = r-shiny
+	optdepends = r-summarizedexperiment
+	optdepends = r-testthat
+	optdepends = r-tfbstools
+	source = https://cran.r-project.org/src/contrib/Signac_1.13.0.tar.gz
+	md5sums = a0cb5bebb0496441c31efa4d50ee90f4
+	b2sums = 006d618df85a9ebcba6117f65f4889ecbe60a28b1c56f559ebc43bc44158c77f43b6103342198f76931c5945fe796aa38f1d8165f445406b6fa37b6de74327f7
+
+pkgname = r-signac
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..20686d1f8b30
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,81 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=Signac
+_pkgver=1.13.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Analysis of Single-Cell Chromatin Data"
+arch=(x86_64)
+url="https://cran.r-project.org/package=$_pkgname"
+license=('MIT')
+depends=(
+  r-biocgenerics
+  r-data.table
+  r-dplyr
+  r-fastmatch
+  r-future
+  r-future.apply
+  r-genomeinfodb
+  r-genomicranges
+  r-ggplot2
+  r-iranges
+  r-irlba
+  r-lifecycle
+  r-patchwork
+  r-pbapply
+  r-rcpp
+  r-rcpproll
+  r-rlang
+  r-rsamtools
+  r-s4vectors
+  r-scales
+  r-seuratobject
+  r-stringi
+  r-tidyr
+  r-tidyselect
+  r-vctrs
+  zlib
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biostrings
+  r-biovizbase
+  r-bsgenome
+  r-chromvar
+  r-ggforce
+  r-ggrepel
+  r-ggseqlogo
+  r-lsa
+  r-miniui
+  r-motifmatchr
+  r-rtracklayer
+  r-seurat
+  r-shiny
+  r-summarizedexperiment
+  r-testthat
+  r-tfbstools
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('a0cb5bebb0496441c31efa4d50ee90f4')
+b2sums=('006d618df85a9ebcba6117f65f4889ecbe60a28b1c56f559ebc43bc44158c77f43b6103342198f76931c5945fe796aa38f1d8165f445406b6fa37b6de74327f7')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}