diff options
| author | Roberto Rossini | 2020-03-22 18:26:02 +0100 |
|---|---|---|
| committer | Roberto Rossini | 2020-03-22 18:26:02 +0100 |
| commit | 435d4d47069da9c7fc5fb9c7afd193edaab6d595 (patch) | |
| tree | ec963fab499c24799be8e7eb31aa23e0018e9ba3 | |
| download | aur-rapmap.tar.gz | |
Initial import
| -rw-r--r-- | .SRCINFO | 19 | ||||
| -rw-r--r-- | PKGBUILD | 38 |
2 files changed, 57 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..f12e5f0f7a25 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,19 @@ +pkgbase = rapmap + pkgdesc = Rapid sensitive and accurate read mapping via quasi-mapping + pkgver = 0.6.0 + pkgrel = 1 + url = https://github.com/COMBINE-lab/RapMap + arch = x86_64 + license = GPL3 + makedepends = gcc>=4.9 + makedepends = clang>=3.4 + makedepends = cmake + makedepends = libdivsufsort + makedepends = cereal + depends = gcc-libs + optdepends = jemalloc + source = rapmap-0.6.0.tar.gz::https://github.com/COMBINE-lab/RapMap/archive/v0.6.0.tar.gz + sha256sums = 1ebb4f9b9b0b20cb73cb3663a57e3d8781f1e56953aec6d2f86e4a037dde11f6 + +pkgname = rapmap + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..cc6d7eb2ac25 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,38 @@ +# Maintainer: Roberto Rossini ("robymetallo") <roberto.rossini.9533@student.uu.se> +_pkgname=RapMap +pkgname=rapmap +pkgver=0.6.0 +pkgrel=1 +pkgdesc="Rapid sensitive and accurate read mapping via quasi-mapping" + +url='https://github.com/COMBINE-lab/RapMap' +arch=('x86_64') + +license=('GPL3') +makedepends=('gcc>=4.9' 'clang>=3.4' cmake libdivsufsort cereal) +depends=(gcc-libs) +optdepends=(jemalloc) + +source=("$pkgname-$pkgver.tar.gz::https://github.com/COMBINE-lab/$_pkgname/archive/v$pkgver.tar.gz") +sha256sums=('1ebb4f9b9b0b20cb73cb3663a57e3d8781f1e56953aec6d2f86e4a037dde11f6') + +prepare() { + cd $_pkgname-$pkgver/ + + mkdir build +} + +build() { + cd $_pkgname-$pkgver/build + + cmake .. + make +} + +check() { + $_pkgname-$pkgver/build/src/rapmap -v | grep "^rapmap ${pkgver}$" +} + +package() { + install -Dm755 $_pkgname-$pkgver/build/src/$pkgname "$pkgdir/usr/bin/$pkgname" +}
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