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author | Ronny Lorenz | 2020-08-20 02:02:12 +0200 |
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committer | Ronny Lorenz | 2020-08-20 02:02:12 +0200 |
commit | 166f7291839c6b7d89e50ca126023cc6a33ce534 (patch) | |
tree | a0b3fac6ca1b8f17cbeea4e54e9db2c801ac8cbb | |
parent | 1d20c31ba2d8d884482126fd01213467b658290e (diff) | |
download | aur-166f7291839c6b7d89e50ca126023cc6a33ce534.tar.gz |
Bump to upstream release v2.4.15
-rw-r--r-- | .SRCINFO | 22 | ||||
-rw-r--r-- | 0001-Fix-compilation-issues-with-GCC-10.patch | 46 | ||||
-rw-r--r-- | PKGBUILD | 13 |
3 files changed, 15 insertions, 66 deletions
@@ -1,7 +1,7 @@ pkgbase = viennarna pkgdesc = RNA Secondary Structure Prediction and Comparison - pkgver = 2.4.14 - pkgrel = 2 + pkgver = 2.4.15 + pkgrel = 1 url = http://www.tbi.univie.ac.at/RNA arch = x86_64 arch = i686 @@ -16,31 +16,29 @@ pkgbase = viennarna makedepends = gsl options = staticlibs options = !strip - source = http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.4.14.tar.gz - source = 0001-Fix-compilation-issues-with-GCC-10.patch - sha256sums = ba9cfc8a48e457fc891628f3229a3924de31714460dc4a4dec081868f802cc28 - sha256sums = 4fb955d969b9a4c9fba7b3e7be7727c008454d1a2ea7ef5263ffc2544c0fe352 + source = http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.4.15.tar.gz + sha256sums = 9ae7614586941ff3471596eade743bd2ec416b2d5c185f35ef93b9845c761d10 pkgname = viennarna depends = perl depends = mpfr depends = gsl optdepends = gri: create 2D plots of secondary structure landscape with RNA2Dfold - provides = Kinfold=1.3 + provides = Kinfold=1.4 provides = RNAforester=2.0 provides = kinwalker=2.0 - provides = viennarna2=2.4.14 - provides = libRNA=2.4.14 + provides = viennarna2=2.4.15 + provides = libRNA=2.4.15 pkgname = python-rna depends = python - depends = viennarna=2.4.14 + depends = viennarna=2.4.15 pkgname = python2-rna depends = python2 - depends = viennarna=2.4.14 + depends = viennarna=2.4.15 pkgname = perl-rna depends = perl - depends = viennarna=2.4.14 + depends = viennarna=2.4.15 diff --git a/0001-Fix-compilation-issues-with-GCC-10.patch b/0001-Fix-compilation-issues-with-GCC-10.patch deleted file mode 100644 index 97f1f8776bf2..000000000000 --- a/0001-Fix-compilation-issues-with-GCC-10.patch +++ /dev/null @@ -1,46 +0,0 @@ -From d1ec784dfae5b46fd70bd1fc49ec3c96e92edf6d Mon Sep 17 00:00:00 2001 -From: Ronny Lorenz <ronny@tbi.univie.ac.at> -Date: Wed, 3 Jun 2020 10:13:13 +0200 -Subject: [PATCH] Fix compilation issues with GCC 10 - ---- - globals.c | 5 +++++ - globals.h | 6 +++--- - 2 files changed, 8 insertions(+), 3 deletions(-) - -diff --git a/globals.c b/globals.c -index c1a8859..e5c1a4a 100644 ---- a/globals.c -+++ b/globals.c -@@ -25,6 +25,11 @@ - #include "globals.h" - #include "cmdline.h" - -+ -+GlobVars GSV; -+GlobArrays GAV; -+GlobToggles GTV; -+ - /* forward declarations privat functions */ - static void ini_globs(void); - static void ini_gtoggles (void); -diff --git a/globals.h b/globals.h -index 622c7db..eafd13c 100644 ---- a/globals.h -+++ b/globals.h -@@ -88,9 +88,9 @@ void clean_up_globals(void); - void log_prog_params(FILE *FP); - void log_start_stop(FILE *FP); - --GlobVars GSV; --GlobArrays GAV; --GlobToggles GTV; -+extern GlobVars GSV; -+extern GlobArrays GAV; -+extern GlobToggles GTV; - - #endif - --- -2.26.2 - @@ -2,8 +2,8 @@ pkgbase=viennarna pkgname=('viennarna' 'python-rna' 'python2-rna' 'perl-rna') -pkgver=2.4.14 -pkgrel=2 +pkgver=2.4.15 +pkgrel=1 pkgdesc="RNA Secondary Structure Prediction and Comparison" arch=('x86_64' 'i686') license=('Custom') @@ -16,16 +16,13 @@ makedepends=( 'perl' 'check' 'mpfr' 'gsl') -source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz - '0001-Fix-compilation-issues-with-GCC-10.patch') +source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz) options=('staticlibs' '!strip') -sha256sums=('ba9cfc8a48e457fc891628f3229a3924de31714460dc4a4dec081868f802cc28' - '4fb955d969b9a4c9fba7b3e7be7727c008454d1a2ea7ef5263ffc2544c0fe352') +sha256sums=('9ae7614586941ff3471596eade743bd2ec416b2d5c185f35ef93b9845c761d10') prepare() { cd "${srcdir}/ViennaRNA-${pkgver}" - patch -d src/Kinfold -p1 -i "${srcdir}/0001-Fix-compilation-issues-with-GCC-10.patch" ./configure \ --with-cluster \ --with-kinwalker \ @@ -49,7 +46,7 @@ package_viennarna() { 'mpfr' 'gsl') optdepends=('gri: create 2D plots of secondary structure landscape with RNA2Dfold') - provides=('Kinfold=1.3' + provides=('Kinfold=1.4' 'RNAforester=2.0' 'kinwalker=2.0' "viennarna2=${pkgver}" |