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authorRonny Lorenz2019-05-31 17:23:02 +0200
committerRonny Lorenz2019-05-31 17:23:05 +0200
commit63dba4317fd1913172197abd5c3b9cd883597c17 (patch)
tree109d73d45b10a65c6d8f0eb8806408f47a76c5dc
parenta456bd2a95259afbffffd4d424887c3081f447c3 (diff)
downloadaur-63dba4317fd1913172197abd5c3b9cd883597c17.tar.gz
Bump to upstream version 2.4.13
- This also enables build/install of the kinwalker program
-rw-r--r--.SRCINFO25
-rw-r--r--PKGBUILD35
2 files changed, 37 insertions, 23 deletions
diff --git a/.SRCINFO b/.SRCINFO
index e1ab235dff0..9e49fca822d 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,8 +1,8 @@
# Generated by mksrcinfo v8
-# Wed Apr 17 11:36:32 UTC 2019
+# Fri May 31 15:22:05 UTC 2019
pkgbase = viennarna
pkgdesc = RNA Secondary Structure Prediction and Comparison
- pkgver = 2.4.12
+ pkgver = 2.4.13
pkgrel = 1
url = http://www.tbi.univie.ac.at/RNA
arch = x86_64
@@ -14,32 +14,33 @@ pkgbase = viennarna
makedepends = python
makedepends = libtool
makedepends = check
+ makedepends = mpfr
+ makedepends = gsl
options = staticlibs
options = !strip
- source = http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.4.12.tar.gz
- sha256sums = 3fca7bd5fd1ed48b6c4551be653aa320373230a97904b35b5a3d7dda8b1ac232
+ source = http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.4.13.tar.gz
+ sha256sums = 915c271b48536a3cc60b3109f11f7fd99dcd26d22621ee50f05e7f1c2f90cabe
pkgname = viennarna
depends = perl
- depends = gsl
depends = mpfr
- optdepends = gsl: use a variety of optimization methods in RNApvmin
+ depends = gsl
optdepends = gri: create 2D plots of secondary structure landscape with RNA2Dfold
provides = Kinfold=1.3
provides = RNAforester=2.0
- provides = RNAlocmin=2.1
- provides = viennarna2=2.4.12
- provides = libRNA=2.4.12
+ provides = kinwalker=2.0
+ provides = viennarna2=2.4.13
+ provides = libRNA=2.4.13
pkgname = python-rna
depends = python
- depends = viennarna=2.4.12
+ depends = viennarna=2.4.13
pkgname = python2-rna
depends = python2
- depends = viennarna=2.4.12
+ depends = viennarna=2.4.13
pkgname = perl-rna
depends = perl
- depends = viennarna=2.4.12
+ depends = viennarna=2.4.13
diff --git a/PKGBUILD b/PKGBUILD
index e406e4dd7ab..b1ad1c89fed 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -2,7 +2,7 @@
pkgbase=viennarna
pkgname=('viennarna' 'python-rna' 'python2-rna' 'perl-rna')
-pkgver=2.4.12
+pkgver=2.4.13
pkgrel=1
pkgdesc="RNA Secondary Structure Prediction and Comparison"
arch=('x86_64' 'i686')
@@ -13,16 +13,21 @@ makedepends=( 'perl'
'python2'
'python'
'libtool'
- 'check')
+ 'check'
+ 'mpfr'
+ 'gsl')
source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz)
options=('staticlibs' '!strip')
-
-sha256sums=('3fca7bd5fd1ed48b6c4551be653aa320373230a97904b35b5a3d7dda8b1ac232')
+sha256sums=('915c271b48536a3cc60b3109f11f7fd99dcd26d22621ee50f05e7f1c2f90cabe')
build() {
cd "${srcdir}/ViennaRNA-${pkgver}"
- ./configure --with-cluster --prefix=/usr INSTALLDIRS=vendor
+ ./configure \
+ --with-cluster \
+ --with-kinwalker \
+ --prefix=/usr \
+ INSTALLDIRS=vendor
make
}
@@ -34,11 +39,15 @@ check() {
package_viennarna() {
depends=('perl'
- 'gsl'
- 'mpfr')
- optdepends=('gsl: use a variety of optimization methods in RNApvmin'
- 'gri: create 2D plots of secondary structure landscape with RNA2Dfold')
- provides=('Kinfold=1.3' 'RNAforester=2.0' 'RNAlocmin=2.1' "viennarna2=${pkgver}" "libRNA=${pkgver}")
+ 'mpfr'
+ 'gsl')
+ optdepends=('gri: create 2D plots of secondary structure landscape with RNA2Dfold')
+ provides=('Kinfold=1.3'
+ 'RNAforester=2.0'
+ 'kinwalker=2.0'
+ "viennarna2=${pkgver}"
+ "libRNA=${pkgver}")
+ conflict=('kinwalker')
cd "${srcdir}/ViennaRNA-${pkgver}"
@@ -54,6 +63,8 @@ package_viennarna() {
make DESTDIR="${pkgdir}" install
cd ../Cluster
make DESTDIR="${pkgdir}" install
+ cd ../Kinwalker
+ make DESTDIR="${pkgdir}" install
cd ../RNAlocmin
make DESTDIR="${pkgdir}" install
cd ../..
@@ -63,11 +74,13 @@ package_viennarna() {
make DESTDIR="${pkgdir}" install
cd ../..
- # install manpages, documentation, and misc files
+ # install manpages, documentation, examples, and misc files
cd man
make DESTDIR="${pkgdir}" install
cd ../doc
make DESTDIR="${pkgdir}" install
+ cd ../examples
+ make DESTDIR="${pkgdir}" install
cd ../misc
make DESTDIR="${pkgdir}" install
cd ..