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authorRonny Lorenz2023-06-10 08:44:29 +0200
committerRonny Lorenz2023-06-10 08:44:29 +0200
commit76911067645b2c7bca21aa288c8017cca3f3d178 (patch)
treeede7845c562bb1f9e227200c7a14fcdbf93140e5
parent6ad4532eaee61a83abb45b5d9e2bffddf5977986 (diff)
downloadaur-76911067645b2c7bca21aa288c8017cca3f3d178.tar.gz
Bump to upstream relase v2.6.0 and remove Python 2 package
-rw-r--r--.SRCINFO23
-rw-r--r--PKGBUILD23
2 files changed, 22 insertions, 24 deletions
diff --git a/.SRCINFO b/.SRCINFO
index a3c37d0a15ee..1169d709a0fb 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,6 @@
pkgbase = viennarna
pkgdesc = RNA Secondary Structure Prediction and Comparison
- pkgver = 2.5.1
+ pkgver = 2.6.0
pkgrel = 1
url = http://www.tbi.univie.ac.at/RNA
arch = x86_64
@@ -8,16 +8,18 @@ pkgbase = viennarna
groups = viennarna-package
license = Custom
makedepends = perl
- makedepends = python2
makedepends = python
makedepends = libtool
makedepends = check
makedepends = mpfr
makedepends = gsl
+ makedepends = lapack
+ makedepends = lapacke
+ makedepends = gcc-fortran
options = staticlibs
options = !strip
- source = http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.5.1.tar.gz
- sha256sums = 05400437cf15595e10b1a25df6c9c48856f356130f9d1e380fa8866b6d27f457
+ source = http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.6.0.tar.gz
+ sha256sums = c239596ac63ff30d98c7629f3cfeaa6a066dc3b577e1b920eb704381bb6c3f85
pkgname = viennarna
depends = perl
@@ -27,17 +29,14 @@ pkgname = viennarna
provides = Kinfold=1.4
provides = RNAforester=2.0
provides = kinwalker=2.0
- provides = viennarna2=2.5.1
- provides = libRNA=2.5.1
+ provides = RNAxplorer=0.9
+ provides = viennarna2=2.6.0
+ provides = libRNA=2.6.0
pkgname = python-rna
depends = python
- depends = viennarna=2.5.1
-
-pkgname = python2-rna
- depends = python2
- depends = viennarna=2.5.1
+ depends = viennarna=2.6.0
pkgname = perl-rna
depends = perl
- depends = viennarna=2.5.1
+ depends = viennarna=2.6.0
diff --git a/PKGBUILD b/PKGBUILD
index 016eb21be63c..09e4648de470 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,8 +1,8 @@
# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
pkgbase=viennarna
-pkgname=('viennarna' 'python-rna' 'python2-rna' 'perl-rna')
-pkgver=2.5.1
+pkgname=('viennarna' 'python-rna' 'perl-rna')
+pkgver=2.6.0
pkgrel=1
pkgdesc="RNA Secondary Structure Prediction and Comparison"
arch=('x86_64' 'i686')
@@ -10,16 +10,19 @@ license=('Custom')
url="http://www.tbi.univie.ac.at/RNA"
groups=('viennarna-package')
makedepends=( 'perl'
- 'python2'
'python'
'libtool'
'check'
'mpfr'
- 'gsl')
+ 'gsl'
+ 'lapack'
+ 'lapacke'
+ 'gcc-fortran')
+
source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz)
options=('staticlibs' '!strip')
-sha256sums=('05400437cf15595e10b1a25df6c9c48856f356130f9d1e380fa8866b6d27f457')
+sha256sums=('c239596ac63ff30d98c7629f3cfeaa6a066dc3b577e1b920eb704381bb6c3f85')
prepare() {
cd "${srcdir}/ViennaRNA-${pkgver}"
@@ -49,6 +52,7 @@ package_viennarna() {
provides=('Kinfold=1.4'
'RNAforester=2.0'
'kinwalker=2.0'
+ 'RNAxplorer=0.9'
"viennarna2=${pkgver}"
"libRNA=${pkgver}")
conflict=('kinwalker')
@@ -71,6 +75,8 @@ package_viennarna() {
make DESTDIR="${pkgdir}" install
cd ../RNAlocmin
make DESTDIR="${pkgdir}" install
+ cd ../RNAxplorer
+ make DESTDIR="${pkgdir}" install
cd ../..
# install library and header files
@@ -104,13 +110,6 @@ package_viennarna() {
rm $pkgdir/usr/share/info/dir
}
-package_python2-rna() {
- depends=('python2' viennarna="${pkgver}")
- cd "${srcdir}/ViennaRNA-${pkgver}"
- cd interfaces/Python2
- make DESTDIR="${pkgdir}" install
-}
-
package_python-rna() {
depends=('python' viennarna="${pkgver}")
cd "${srcdir}/ViennaRNA-${pkgver}"