Initial commit

3 files changed, 262 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d724ae870ffe
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,214 @@
+pkgbase = jasp-rbundle
+	pkgdesc = A bundle of R packages needed by JASP desktop
+	pkgver = 2015.09.04
+	pkgrel = 1
+	url = http://cran.r-project.org/
+	arch = any
+	makedepends = r
+	makedepends = gcc-fortran
+	depends = r
+	provides = r-cran-abind
+	provides = r-cran-htmltools
+	provides = r-cran-jsonlite
+	provides = r-cran-yaml
+	provides = r-cran-xtable
+	provides = r-cran-iterators
+	provides = r-cran-arm
+	provides = r-cran-htmlwidgets
+	provides = r-cran-rstudioapi
+	provides = r-cran-rcolorbrewer
+	provides = r-cran-dichromat
+	provides = r-cran-labeling
+	provides = r-cran-pkgmaker
+	provides = r-cran-registry
+	provides = r-cran-rngtools
+	provides = r-cran-gridbase
+	provides = r-cran-foreach
+	provides = r-cran-doparallel
+	provides = r-cran-stringi
+	provides = r-cran-magrittr
+	provides = r-cran-modeltools
+	provides = r-cran-sparsem
+	provides = r-cran-matrixcalc
+	provides = r-cran-mi
+	provides = r-cran-diagrammer
+	provides = r-cran-formula
+	provides = r-cran-proto
+	provides = r-cran-scales
+	provides = r-cran-latticeextra
+	provides = r-cran-acepack
+	provides = r-cran-gtable
+	provides = r-cran-gridextra
+	provides = r-cran-nmf
+	provides = r-cran-irlba
+	provides = r-cran-digest
+	provides = r-cran-rjson
+	provides = r-cran-whisker
+	provides = r-cran-th.data
+	provides = r-cran-sandwich
+	provides = r-cran-zoo
+	provides = r-cran-coda
+	provides = r-cran-pbapply
+	provides = r-cran-mvtnorm
+	provides = r-cran-stringr
+	provides = r-cran-gtools
+	provides = r-cran-matrixmodels
+	provides = r-cran-rcppeigen
+	provides = r-cran-minqa
+	provides = r-cran-nloptr
+	provides = r-cran-reshape2
+	provides = r-cran-coin
+	provides = r-cran-pbkrtest
+	provides = r-cran-quantreg
+	provides = r-cran-colorspace
+	provides = r-cran-psych
+	provides = r-cran-ellipse
+	provides = r-cran-sem
+	provides = r-cran-plyr
+	provides = r-cran-hmisc
+	provides = r-cran-igraph
+	provides = r-cran-jpeg
+	provides = r-cran-png
+	provides = r-cran-sna
+	provides = r-cran-corpcor
+	provides = r-cran-ggplot2
+	provides = r-cran-glasso
+	provides = r-cran-huge
+	provides = r-cran-fdrtool
+	provides = r-cran-d3network
+	provides = r-cran-ggm
+	provides = r-cran-elliptic
+	provides = r-cran-contfrac
+	provides = r-cran-desolve
+	provides = r-cran-mnormt
+	provides = r-cran-pbivnorm
+	provides = r-cran-quadprog
+	provides = r-cran-estimability
+	provides = r-cran-multcomp
+	provides = r-cran-lmtest
+	provides = r-cran-qvcalc
+	provides = r-cran-relimp
+	provides = r-cran-bayesfactor
+	provides = r-cran-lme4
+	provides = r-cran-rcpp
+	provides = r-cran-rinside
+	provides = r-cran-afex
+	provides = r-cran-base64
+	provides = r-cran-car
+	provides = r-cran-effects
+	provides = r-cran-qgraph
+	provides = r-cran-hypergeo
+	provides = r-cran-lavaan
+	provides = r-cran-logspline
+	provides = r-cran-lsmeans
+	provides = r-cran-plotrix
+	provides = r-cran-rjsonio
+	provides = r-cran-semtools
+	provides = r-cran-vcd
+	provides = r-cran-vcdextra
+	provides = r-cran-gnm
+	conflicts = r-cran-abind
+	conflicts = r-cran-htmltools
+	conflicts = r-cran-jsonlite
+	conflicts = r-cran-yaml
+	conflicts = r-cran-xtable
+	conflicts = r-cran-iterators
+	conflicts = r-cran-arm
+	conflicts = r-cran-htmlwidgets
+	conflicts = r-cran-rstudioapi
+	conflicts = r-cran-rcolorbrewer
+	conflicts = r-cran-dichromat
+	conflicts = r-cran-labeling
+	conflicts = r-cran-pkgmaker
+	conflicts = r-cran-registry
+	conflicts = r-cran-rngtools
+	conflicts = r-cran-gridbase
+	conflicts = r-cran-foreach
+	conflicts = r-cran-doparallel
+	conflicts = r-cran-stringi
+	conflicts = r-cran-magrittr
+	conflicts = r-cran-modeltools
+	conflicts = r-cran-sparsem
+	conflicts = r-cran-matrixcalc
+	conflicts = r-cran-mi
+	conflicts = r-cran-diagrammer
+	conflicts = r-cran-formula
+	conflicts = r-cran-proto
+	conflicts = r-cran-scales
+	conflicts = r-cran-latticeextra
+	conflicts = r-cran-acepack
+	conflicts = r-cran-gtable
+	conflicts = r-cran-gridextra
+	conflicts = r-cran-nmf
+	conflicts = r-cran-irlba
+	conflicts = r-cran-digest
+	conflicts = r-cran-rjson
+	conflicts = r-cran-whisker
+	conflicts = r-cran-th.data
+	conflicts = r-cran-sandwich
+	conflicts = r-cran-zoo
+	conflicts = r-cran-coda
+	conflicts = r-cran-pbapply
+	conflicts = r-cran-mvtnorm
+	conflicts = r-cran-stringr
+	conflicts = r-cran-gtools
+	conflicts = r-cran-matrixmodels
+	conflicts = r-cran-rcppeigen
+	conflicts = r-cran-minqa
+	conflicts = r-cran-nloptr
+	conflicts = r-cran-reshape2
+	conflicts = r-cran-coin
+	conflicts = r-cran-pbkrtest
+	conflicts = r-cran-quantreg
+	conflicts = r-cran-colorspace
+	conflicts = r-cran-psych
+	conflicts = r-cran-ellipse
+	conflicts = r-cran-sem
+	conflicts = r-cran-plyr
+	conflicts = r-cran-hmisc
+	conflicts = r-cran-igraph
+	conflicts = r-cran-jpeg
+	conflicts = r-cran-png
+	conflicts = r-cran-sna
+	conflicts = r-cran-corpcor
+	conflicts = r-cran-ggplot2
+	conflicts = r-cran-glasso
+	conflicts = r-cran-huge
+	conflicts = r-cran-fdrtool
+	conflicts = r-cran-d3network
+	conflicts = r-cran-ggm
+	conflicts = r-cran-elliptic
+	conflicts = r-cran-contfrac
+	conflicts = r-cran-desolve
+	conflicts = r-cran-mnormt
+	conflicts = r-cran-pbivnorm
+	conflicts = r-cran-quadprog
+	conflicts = r-cran-estimability
+	conflicts = r-cran-multcomp
+	conflicts = r-cran-lmtest
+	conflicts = r-cran-qvcalc
+	conflicts = r-cran-relimp
+	conflicts = r-cran-bayesfactor
+	conflicts = r-cran-lme4
+	conflicts = r-cran-rcpp
+	conflicts = r-cran-rinside
+	conflicts = r-cran-afex
+	conflicts = r-cran-base64
+	conflicts = r-cran-car
+	conflicts = r-cran-effects
+	conflicts = r-cran-qgraph
+	conflicts = r-cran-hypergeo
+	conflicts = r-cran-lavaan
+	conflicts = r-cran-logspline
+	conflicts = r-cran-lsmeans
+	conflicts = r-cran-plotrix
+	conflicts = r-cran-rjsonio
+	conflicts = r-cran-semtools
+	conflicts = r-cran-vcd
+	conflicts = r-cran-vcdextra
+	conflicts = r-cran-gnm
+	source = rbundle.R
+	md5sums = 85087ac1d6e0ffa885f4887c40985982
+
+pkgname = jasp-rbundle
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..4556da56be3e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,32 @@
+# Maintainer: Stephen Martin <stephenSRMMartin at gmail dot com>
+pkgname=jasp-rbundle
+pkgver=2015.09.04
+pkgrel=1
+pkgdesc="A bundle of R packages needed by JASP desktop"
+url="http://cran.r-project.org/"
+arch='any'
+depends='r'
+makedepends=('r' 'gcc-fortran')
+source=("rbundle.R")
+
+pkgver() {
+	echo $(date +%Y.%m.%d)
+}
+provides=('r-cran-abind' 'r-cran-htmltools' 'r-cran-jsonlite' 'r-cran-yaml' 'r-cran-xtable' 'r-cran-iterators' 'r-cran-arm' 'r-cran-htmlwidgets' 'r-cran-rstudioapi' 'r-cran-rcolorbrewer' 'r-cran-dichromat' 'r-cran-labeling' 'r-cran-pkgmaker' 'r-cran-registry' 'r-cran-rngtools' 'r-cran-gridbase' 'r-cran-foreach' 'r-cran-doparallel' 'r-cran-stringi' 'r-cran-magrittr' 'r-cran-modeltools' 'r-cran-sparsem' 'r-cran-matrixcalc' 'r-cran-mi' 'r-cran-diagrammer' 'r-cran-formula' 'r-cran-proto' 'r-cran-scales' 'r-cran-latticeextra' 'r-cran-acepack' 'r-cran-gtable' 'r-cran-gridextra' 'r-cran-nmf' 'r-cran-irlba' 'r-cran-digest' 'r-cran-rjson' 'r-cran-whisker' 'r-cran-th.data' 'r-cran-sandwich' 'r-cran-zoo' 'r-cran-coda' 'r-cran-pbapply' 'r-cran-mvtnorm' 'r-cran-stringr' 'r-cran-gtools' 'r-cran-matrixmodels' 'r-cran-rcppeigen' 'r-cran-minqa' 'r-cran-nloptr' 'r-cran-reshape2' 'r-cran-coin' 'r-cran-pbkrtest' 'r-cran-quantreg' 'r-cran-colorspace' 'r-cran-psych' 'r-cran-ellipse' 'r-cran-sem' 'r-cran-plyr' 'r-cran-hmisc' 'r-cran-igraph' 'r-cran-jpeg' 'r-cran-png' 'r-cran-sna' 'r-cran-corpcor' 'r-cran-ggplot2' 'r-cran-glasso' 'r-cran-huge' 'r-cran-fdrtool' 'r-cran-d3network' 'r-cran-ggm' 'r-cran-elliptic' 'r-cran-contfrac' 'r-cran-desolve' 'r-cran-mnormt' 'r-cran-pbivnorm' 'r-cran-quadprog' 'r-cran-estimability' 'r-cran-multcomp' 'r-cran-lmtest' 'r-cran-qvcalc' 'r-cran-relimp' 'r-cran-bayesfactor' 'r-cran-lme4' 'r-cran-rcpp' 'r-cran-rinside' 'r-cran-afex' 'r-cran-base64' 'r-cran-car' 'r-cran-effects' 'r-cran-qgraph' 'r-cran-hypergeo' 'r-cran-lavaan' 'r-cran-logspline' 'r-cran-lsmeans' 'r-cran-plotrix' 'r-cran-rjsonio' 'r-cran-semtools' 'r-cran-vcd' 'r-cran-vcdextra' 'r-cran-gnm')
+conflicts=('r-cran-abind' 'r-cran-htmltools' 'r-cran-jsonlite' 'r-cran-yaml' 'r-cran-xtable' 'r-cran-iterators' 'r-cran-arm' 'r-cran-htmlwidgets' 'r-cran-rstudioapi' 'r-cran-rcolorbrewer' 'r-cran-dichromat' 'r-cran-labeling' 'r-cran-pkgmaker' 'r-cran-registry' 'r-cran-rngtools' 'r-cran-gridbase' 'r-cran-foreach' 'r-cran-doparallel' 'r-cran-stringi' 'r-cran-magrittr' 'r-cran-modeltools' 'r-cran-sparsem' 'r-cran-matrixcalc' 'r-cran-mi' 'r-cran-diagrammer' 'r-cran-formula' 'r-cran-proto' 'r-cran-scales' 'r-cran-latticeextra' 'r-cran-acepack' 'r-cran-gtable' 'r-cran-gridextra' 'r-cran-nmf' 'r-cran-irlba' 'r-cran-digest' 'r-cran-rjson' 'r-cran-whisker' 'r-cran-th.data' 'r-cran-sandwich' 'r-cran-zoo' 'r-cran-coda' 'r-cran-pbapply' 'r-cran-mvtnorm' 'r-cran-stringr' 'r-cran-gtools' 'r-cran-matrixmodels' 'r-cran-rcppeigen' 'r-cran-minqa' 'r-cran-nloptr' 'r-cran-reshape2' 'r-cran-coin' 'r-cran-pbkrtest' 'r-cran-quantreg' 'r-cran-colorspace' 'r-cran-psych' 'r-cran-ellipse' 'r-cran-sem' 'r-cran-plyr' 'r-cran-hmisc' 'r-cran-igraph' 'r-cran-jpeg' 'r-cran-png' 'r-cran-sna' 'r-cran-corpcor' 'r-cran-ggplot2' 'r-cran-glasso' 'r-cran-huge' 'r-cran-fdrtool' 'r-cran-d3network' 'r-cran-ggm' 'r-cran-elliptic' 'r-cran-contfrac' 'r-cran-desolve' 'r-cran-mnormt' 'r-cran-pbivnorm' 'r-cran-quadprog' 'r-cran-estimability' 'r-cran-multcomp' 'r-cran-lmtest' 'r-cran-qvcalc' 'r-cran-relimp' 'r-cran-bayesfactor' 'r-cran-lme4' 'r-cran-rcpp' 'r-cran-rinside' 'r-cran-afex' 'r-cran-base64' 'r-cran-car' 'r-cran-effects' 'r-cran-qgraph' 'r-cran-hypergeo' 'r-cran-lavaan' 'r-cran-logspline' 'r-cran-lsmeans' 'r-cran-plotrix' 'r-cran-rjsonio' 'r-cran-semtools' 'r-cran-vcd' 'r-cran-vcdextra' 'r-cran-gnm')
+
+
+prepare(){
+	mkdir -p $srcdir/usr/lib/R/library/
+}
+
+build(){
+	cd $srcdir
+	_libraryPath=$srcdir/usr/lib/R/library/
+	Rscript rbundle.R $_libraryPath
+}
+
+package(){
+	cp -r $srcdir/usr $pkgdir/
+}	
+md5sums=('85087ac1d6e0ffa885f4887c40985982')
diff --git a/rbundle.R b/rbundle.R
new file mode 100644
index 000000000000..a988ff0ba0fb
--- /dev/null
+++ b/rbundle.R
@@ -0,0 +1,16 @@
+#Set repo to 0cloud
+options('repos' = 'http://cran.revolutionanalytics.com')
+
+#Grab library dir
+path <- commandArgs(trailingOnly = TRUE)
+print(path)
+
+.libPaths(new = path)
+
+#List of R packages to be installed
+libs <- c('BayesFactor','lme4','Rcpp','RInside','afex','base64','car','effects','qgraph','hypergeo','lavaan',
+	  'logspline','lsmeans','plotrix','RJSONIO','semTools','vcd','vcdExtra','gnm')
+
+#They modified gnm
+
+install.packages(libs,path,'http://cran.us.r-project.org')