first upload

1 files changed, 35 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
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+# Maintainer: Joshua Hardy <joshinsilico@gmail.com>
+pkgname=emspring
+pkgver=0.84
+pkgrel=1
+pkgdesc="Single Particle Reconstruction from Images of kNown Geometry"
+arch=(x86_64)
+url="http://www.sachse.embl.de/emspring/"
+license=('GPL')
+depends=('python2-pip' 'libpng12' 'tcsh' 'qtwebkit' 'glu' 'java-environment')
+source=("http://www.sachse.embl.de/emspring/_download/spring-latest-linux.tar.gz" "emspring.sh" "emspring.csh")
+md5sums=('SKIP' 'SKIP' 'SKIP')
+options=()
+
+prepare() {
+echo "----------------------------------------------------------"
+echo "If you find Spring useful for your research, please cite:"
+echo "Desfosses, A., Ciuffa, R., Gutsche, I., and Sachse, C. (2014). SPRING - an image processing package for single-particle based helical reconstruction from electron cryomicrographs. J Struct Biol 185, 15-26."
+echo "----------------------------------------------------------"
+}
+build() {
+cd ${srcdir}/spring_*
+ln -s /usr/lib/libncursesw.so.6 parts/EMAN2/lib/libncursesw.so.5
+#sh patches/binary_install_linux.sh
+cd patches; wget https://bootstrap.pypa.io/get-pip.py; cd ..
+PYTHONPATH=$PWD/lib/python2.7/site-packages LD_LIBRARY_PATH=$PWD/parts/EMAN2/lib ./parts/EMAN2/Python/bin/python patches/get-pip.py
+PYTHONPATH=$PWD/lib/python2.7/site-packages LD_LIBRARY_PATH=$PWD/parts/EMAN2/lib ./parts/EMAN2/Python/bin/pip  install -U --prefix=$PWD appdirs packaging
+sh patches/binary_install_linux.sh
+}
+package() {
+	cd ${srcdir}/spring_*
+	install -d $pkgdir/opt/emspring $pkgdir/etc/profile.d/ $pkgdir/usr/lib
+	cp -r * $pkgdir/opt/emspring/.
+	install -D -m755 $srcdir/emspring*sh $pkgdir/etc/profile.d/.
+	ln -s /usr/lib/libncursesw.so.6 $pkgdir/usr/lib/libncursesw.so.5
+}