Initial commit

1 files changed, 56 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
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+# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
+
+pkgname=fragrep
+pkgver=2
+pkgrel=1
+pkgdesc="Detect nucleotide pattern fragments in genomes that occur in a given order"
+arch=('x86_64' 'i686')
+license=('GPL2')
+url="https://www.bioinf.uni-leipzig.de/Software/fragrep/"
+depends=()
+optdepends=()
+makedepends=()
+provides=()
+source=(http://www.bioinf.uni-leipzig.de/Software/fragrep/fragrep-${pkgver}.tar.gz
+        buildfix.patch)
+md5sums=( '1b33fdeb039a65f98c26bc738c81c14e'
+          '0c5606ea4b4a0b79b1df729ed5a32840')
+
+prepare() {
+  cd "${srcdir}/${pkgname}-${pkgver}"
+  patch -p1 < ../buildfix.patch
+}
+
+build() {
+  cd "${srcdir}/${pkgname}-${pkgver}"
+  make release || return 1
+}
+
+package() {
+  cd "${srcdir}/${pkgname}-${pkgver}"
+
+  # install binaries
+  install -Dm755 fragrep "${pkgdir}/usr/bin/fragrep"
+  install -Dm755 pattern2eps "${pkgdir}/usr/bin/pattern2eps"
+  install -Dm755 aln2pattern "${pkgdir}/usr/bin/aln2pattern"
+  install -Dm755 alimatch "${pkgdir}/usr/bin/alimatch"
+  install -Dm755 snglnaln "${pkgdir}/usr/bin/snglnaln"
+  install -Dm755 fragexpand "${pkgdir}/usr/bin/fragexpand"
+  install -Dm755 fasplit "${pkgdir}/usr/bin/fasplit"
+  
+
+  # install manpages
+  for man in man/*.1
+  do
+    file=`basename $man`
+    install -Dm644 ${man} "${pkgdir}/usr/share/man/man1/${file}"
+  done
+
+  # install documentation
+  install -Dm644 doc/fragrep-tutorial.html "${pkgdir}/usr/share/doc/${pkgname}/fragrep-tutorial"
+  install -Dm644 doc/fragrep.css "${pkgdir}/usr/share/doc/${pkgname}/fragrep.css"
+  install -Dm644 doc/YRNA.aln "${pkgdir}/usr/share/doc/${pkgname}/YRNA.aln"
+  install -Dm644 doc/X.fa "${pkgdir}/usr/share/doc/${pkgname}/X.fa"
+
+}
+