Initial commit

1 files changed, 33 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
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+# Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at>
+
+pkgname=gotohscan
+pkgver=2.0_alpha
+_pkgver=${pkgver//_/-}
+pkgrel=1
+pkgdesc="Search short sequences in large database sequences by computing all semi-global alignments"
+arch=('i686' 'x86_64')
+license=('Custom')
+url="http://www.bioinf.uni-leipzig.de/Software/GotohScan"
+depends=('perl')
+makedepends=()
+provides=('GotohScan2a=2.0' 'fastaALN2frequency.pl' 'reformatMotif.pl')
+source=(http://www.bioinf.uni-leipzig.de/Software/GotohScan/GotohScan_${_pkgver}.tar.gz
+        http://www.bioinf.uni-leipzig.de/Software/GotohScan/README
+        'package.patch')
+md5sums=( '6ecf4071c8ef1775e5102adb7c7603ca'
+          '0d7ed086e2aec7cbb1879f99211229f4'
+          '877991c3faeee70f5b0ce3746888bffd')
+
+build() {
+  cd "${srcdir}/GotohScan_${_pkgver}"
+  patch -p1 < ${srcdir}/package.patch
+  cp ${srcdir}/README doc/README_1.3
+  autoreconf -i
+  ./configure --prefix=/usr || return 1
+  make || return 1
+}
+
+package() {
+  cd "${srcdir}/GotohScan_${_pkgver}"
+  make DESTDIR="${pkgdir}" install || return 1
+}