diff options
| author | BioArchLinuxBot | 2025-02-20 12:02:03 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2025-02-20 12:02:03 +0000 |
| commit | 3119c9a1bdd7d58a7662e5223d82cfbd865fac46 (patch) | |
| tree | 03164367a8c055f9d34a06a5af4b9766308bf60b /PKGBUILD | |
| parent | 7f975fbb8122548061a22eebaf8cb25db9e7deac (diff) | |
| download | aur-kraken2.tar.gz | |
[lilac] updated to 2.14-1
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 23 |
1 files changed, 12 insertions, 11 deletions
@@ -1,38 +1,39 @@ pkgname=kraken2 -pkgver=2.1.3 +pkgver=2.14 +_pkgver=$(echo "$pkgver" | sed 's/\.//2') pkgrel=1 pkgdesc="Improved vesion of kraken ultrafast metagenomic sequence classification tool. https://doi.org/10.1186/s13059-019-1891-0" arch=('i686' 'x86_64') url="https://github.com/DerrickWood/kraken2" license=('MIT') depends=('glibc' 'gcc-libs' 'blast+' 'perl' 'bash' 'python' 'zlib') -source=("${pkgname}-${pkgver}.tar.gz::https://github.com/DerrickWood/kraken2/archive/refs/tags/v${pkgver}.tar.gz" +source=("${pkgname}-${pkgver}.tar.gz::https://github.com/DerrickWood/kraken2/archive/refs/tags/v${_pkgver}.tar.gz" 'Makefile.patch' 'fastaread.patch') -sha256sums=('5269fa14adfb02e38c2da2e605e909a432d76c680d73e2e0e80e27ccd04d7c69' - 'e57d358f4cc234831bf7808bb72a423ebbe13feefeba7204cd2b82fa6f3ea09b' +sha256sums=('75ffbf82bd13232ec8d39990f48454c6f7d98ceb589af80a60c7e9ed046e7f18' + 'e08f748b3e34ec5efd05756886e8b8901ff5710f8ea67927e2666166c3e7d9ca' '40bdae9d36e7212197f32d5dc49d7d676593e0a0e0f51e7ef8c0c20ccd2d999e') prepare() { - cp Makefile.patch ${pkgname}-${pkgver}/src - cp fastaread.patch ${pkgname}-${pkgver}/scripts - cd ${pkgname}-${pkgver}/src + cp Makefile.patch ${pkgname}-${_pkgver}/ + cp fastaread.patch ${pkgname}-${_pkgver}/scripts + cd ${pkgname}-${_pkgver} # patch makefile to use $(DESTDIR) and LDFLAGS - patch -p2 < Makefile.patch - cd ../scripts + patch -p1 < Makefile.patch + cd scripts/ # Slighly more robust method to obtain taxid of fasta files patch -p1 < fastaread.patch } build() { - cd ${pkgname}-${pkgver}/src + cd ${pkgname}-${_pkgver}/src export KRAKEN2_DIR=/usr/lib/kraken2 make } package() { - cd ${pkgname}-${pkgver}/src + cd ${pkgname}-${_pkgver}/src install -d ${pkgdir}/usr/bin install -d ${pkgdir}/usr/lib/kraken2 install -d ${pkgdir}/usr/share/${pkgname} |