Created bx-python package

1 files changed, 36 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
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+# Maintainer: Decrypted Epsilon <decrypted.epsilon at gmail dot com>
+
+pkgname=python2-bxpython
+pkgver=0.7.3
+pkgrel=1
+pkgdesc="Tools for manipulating biological data, particularly multiple sequence alignments"
+arch=('any')
+url="https://pypi.python.org/pypi/bx-python"
+license=('GPL3')
+depends=('python2' 'python2-numpy')
+makedepends=('python2-nose')
+source=(https://pypi.python.org/packages/source/b/bx-python/bx-python-$pkgver.tar.gz)
+sha256sums=('518895e2dca313d7634c5cf48190b4020a463d6aa6adb42a261630bbd7e0e297')
+
+prepare() {
+    cd "$srcdir/bx-python-${pkgver}/scripts"
+    sed -e "s|#![ ]*/usr/bin/python$|#!/usr/bin/python2|" \
+        -e "s|#![ ]*/usr/bin/env python$|#!/usr/bin/env python2|" \
+        -e "s|#![ ]*/bin/env python$|#!/usr/bin/env python2|" \
+        -i $(find . -name '*.py')
+}
+
+build() {
+    msg "Building bx-python python2"
+    cd "$srcdir/bx-python-${pkgver}"
+    python2 setup.py build_ext --inplace
+    python2 setup.py build
+}
+
+
+package() {
+    depends=()
+    cd ${srcdir}/bx-python-${pkgver}
+
+    python2 setup.py install --root=${pkgdir}    
+}
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