shrimp-2.2.3-1

1 files changed, 37 insertions, 0 deletions

diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..89c10cc32ab0
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,37 @@
+# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
+
+pkgname=shrimp
+pkgver=2.2.3
+pkgrel=1
+pkgdesc="SHort Read Mapping Package"
+arch=('i686' 'x86_64')
+url="http://compbio.cs.toronto.edu/shrimp/"
+license=('custom')
+depends=('gcc-libs' 'zlib')
+source=("$pkgname-$pkgver.tar.gz::http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${pkgver//./_}.src.tar.gz")
+md5sums=('c69a5e30f2f81045c5ff84c4e3f318d5')
+
+prepare() {
+  cd $srcdir/SHRiMP_${pkgver//./_}
+
+  sed -e 's|LDFLAGS=|LDFLAGS += |' \
+      -i Makefile
+}
+
+build() {
+  cd $srcdir/SHRiMP_${pkgver//./_}
+
+  export CXXFLAGS+=" -fopenmp"
+
+  make
+}
+
+package() {
+  cd $srcdir/SHRiMP_${pkgver//./_}
+
+  for file in bin/* ; do
+    install -Dm755 $file $pkgdir/usr/bin/$(basename $file)
+  done
+
+  install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
+}