update

1 files changed, 1367 insertions, 0 deletions

diff --git a/snap-autoconf.patch b/snap-autoconf.patch
new file mode 100644
index 000000000000..eb8f9ff26fec
--- /dev/null
+++ b/snap-autoconf.patch
@@ -0,0 +1,1367 @@
+diff --git a/Makefile.am b/Makefile.am
+new file mode 100644
+index 0000000..779a633
+--- /dev/null
++++ b/Makefile.am
+@@ -0,0 +1,32 @@
++SUBDIRS= glib-core snap-core snap-adv examples # snap-exp glib-adv
++
++#DOC_FILES= \
++#    $(top_srcdir)/doc/attrtype.htm \
++#    $(NULL)
++
++noinst_HEADERS= \
++    autoclean.sh \
++    autogen.sh \
++    $(DOC_FILES) \
++    $(NULL)
++
++EXTRA_DIST = libsnap.pc.in
++
++pkgconfigdir = $(libdir)/pkgconfig
++pkgconfig_DATA = libsnap.pc
++
++EXT_FLAGS=
++@MK@GITNUMTMP=$(shell cd "$(top_srcdir)"; A=$$(git show | head -n 1 | awk '{print $$2}'); echo $${A:0:7}; cd - > /dev/null )
++#@MK@SVNNUMTMP=$(shell cd "$(top_srcdir)"; LC_ALL=C svn info | grep -i Revision | awk '{print $$2}'; cd - > /dev/null )
++#@MK@ifeq ($(SVNNUMTMP),)
++#EXT_FLAGS= -DSVN_VERSION="${GITNUMTMP}"
++#@MK@else
++#EXT_FLAGS= -DSVN_VERSION="${SVNNUMTMP}"
++#@MK@endif
++@MK@ifeq ($(GITNUMTMP),)
++@MK@else
++EXT_FLAGS+= -DSVN_VERSION="${GITNUMTMP}"
++@MK@endif
++CFLAGS+=$(EXT_FLAGS)
++CXXFLAGS+=$(EXT_FLAGS)
++
+diff --git a/autoclean.sh b/autoclean.sh
+new file mode 100755
+index 0000000..070ef85
+--- /dev/null
++++ b/autoclean.sh
+@@ -0,0 +1,25 @@
++#!/bin/sh
++
++chmod 755 $0 autogen.sh config.guess config.rpath config.status config.sub configure depcomp install-sh missing
++
++make -C palmos distclean
++rm -rf palmos/Debug/
++rm -rf palmos/Device/
++rm -f palmos/.dependencies*
++rm -f src/sections.h
++
++make clean
++make distclean
++
++rm -f *.o
++
++rm -f autoscan.log
++rm -f config.log
++rm -f config.status
++rm -f config.h
++rm -f Makefile
++rm -rf ./autom4te.cache/
++rm -f gmon.out
++
++#rm -f ./src/Makefile.in
++#rm -f ./Makefile.in
+diff --git a/autogen.sh b/autogen.sh
+new file mode 100755
+index 0000000..eb759ab
+--- /dev/null
++++ b/autogen.sh
+@@ -0,0 +1,38 @@
++#!/bin/sh
++
++./autoclean.sh
++
++rm -f configure
++
++rm -f Makefile.in
++
++rm -f config.guess
++rm -f config.sub
++rm -f install-sh
++rm -f missing
++rm -f depcomp
++
++if [ 0 = 1 ]; then
++autoscan
++else
++
++touch NEWS
++touch README
++touch AUTHORS
++touch ChangeLog
++touch config.h.in
++
++#libtoolize --copy --force
++aclocal
++automake -a -c
++autoconf
++autoreconf -f -i -Wall,no-obsolete
++autoreconf -f -i -Wall,no-obsolete
++
++#./configure --enable-debug
++#./configure --prefix=/usr --includedir=/usr/include/libsnap/blank/
++
++#make clean
++#make
++
++fi
+diff --git a/configure.ac b/configure.ac
+new file mode 100644
+index 0000000..8d370a7
+--- /dev/null
++++ b/configure.ac
+@@ -0,0 +1,94 @@
++#                                               -*- Autoconf -*-
++# Process this file with autoconf to produce a configure script.
++
++AC_PREREQ([2.61])
++AC_INIT(snap, 2.4, [BUG-REPORT-ADDRESS])
++AC_CONFIG_SRCDIR([snap-core/alg.cpp])
++AC_CONFIG_HEADERS([config.h])
++AM_INIT_AUTOMAKE(-Wall subdir-objects foreign color-tests dist-bzip2 parallel-tests)
++
++#magic for conditional check in Makefile:
++MK=''; AC_SUBST(MK)
++SED=sed
++
++# Checks for programs.
++AM_PROG_AR
++AC_PROG_CXX
++AC_PROG_CC
++AC_PROG_LN_S
++AC_PROG_CPP
++AC_PROG_INSTALL
++AC_PROG_MAKE_SET
++AC_PROG_LIBTOOL
++
++# Checks for libraries.
++LT_PREREQ([2.2])
++#LT_INIT([shared static])
++LT_INIT([disable-static])
++
++
++# FIXME: Replace `main' with a function in `-lgtest':
++AC_CHECK_LIB([gtest], [main])
++
++# debug
++AC_ARG_ENABLE([debug],
++	AS_HELP_STRING([--enable-debug],[Compile the debug version (default: disabled)]),
++	[enable_debug=$enableval],
++	[enable_debug=no])
++AM_CONDITIONAL([DEBUG], [test $enable_debug = "yes"])
++if test "x$enable_debug" = "xyes"; then
++  changequote({,})
++  CFLAGS=`echo "$CFLAGS" | $SED -e 's/-O[0-9s]*//g'`
++  CXXFLAGS=`echo "$CXXFLAGS" | $SED -e 's/-O[0-9s]*//g'`
++  changequote([,])
++  dnl add -O0 only if GCC or ICC is used
++  if test "$GCC" = "yes" || test "$ICC" = "yes"; then
++    CFLAGS="$CFLAGS -O0"
++    CXXFLAGS="$CXXFLAGS -O0"
++  fi
++else
++  changequote({,})
++  CFLAGS=`echo "$CFLAGS" | $SED -e 's/-g//g'`
++  CXXFLAGS=`echo "$CXXFLAGS" | $SED -e 's/-g//g'`
++  changequote([,])
++fi
++
++# Checks for header files.
++AC_CHECK_HEADERS([arpa/inet.h fcntl.h float.h inttypes.h limits.h netdb.h netinet/in.h stddef.h stdint.h stdlib.h string.h sys/file.h sys/ioctl.h sys/mount.h sys/param.h sys/socket.h sys/time.h unistd.h])
++
++# Checks for typedefs, structures, and compiler characteristics.
++AC_CHECK_HEADER_STDBOOL
++AC_C_INLINE
++AC_TYPE_INT32_T
++AC_TYPE_INT64_T
++AC_TYPE_MODE_T
++AC_TYPE_OFF_T
++AC_TYPE_PID_T
++AC_C_RESTRICT
++AC_TYPE_SIZE_T
++AC_TYPE_SSIZE_T
++AC_TYPE_UINT32_T
++AC_TYPE_UINT64_T
++AC_TYPE_UINT8_T
++AC_CHECK_TYPES([ptrdiff_t])
++
++# Checks for library functions.
++AC_FUNC_FORK
++AC_FUNC_MALLOC
++AC_FUNC_MKTIME
++AC_FUNC_MMAP
++AC_FUNC_REALLOC
++AC_FUNC_STRERROR_R
++AC_FUNC_STRTOD
++AC_CHECK_FUNCS([clock_gettime dup2 fdatasync floor ftruncate getcwd gethostbyaddr gethostbyname gettimeofday localtime_r memchr memmove memset mkdir munmap pow putenv socket sqrt strchr strdup strerror strrchr strstr strtol])
++
++AC_CONFIG_FILES([Makefile
++                 libsnap.pc \
++                 examples/Makefile
++                 glib-core/Makefile
++                 glib-adv/Makefile
++                 snap-core/Makefile
++                 snap-adv/Makefile
++                 snap-exp/Makefile
++                ])
++AC_OUTPUT
+diff --git a/examples/Makefile.am b/examples/Makefile.am
+new file mode 100644
+index 0000000..ec5c194
+--- /dev/null
++++ b/examples/Makefile.am
+@@ -0,0 +1,243 @@
++
++AM_LDFLAGS=
++AM_CPPFLAGS=
++
++DEFS+= \
++    -I$(top_srcdir)/glib-core \
++    -I$(top_srcdir)/glib-adv \
++    -I$(top_srcdir)/snap-core \
++    -I$(top_srcdir)/snap-adv \
++    -I$(top_srcdir)/snap-exp \
++    -I$(top_builddir)/ \
++    `getconf LFS_CFLAGS` \
++    `getconf LFS64_CFLAGS` \
++    -D_GNU_SOURCE \
++    -D_FILE_OFFSET_BITS=64 \
++    -DHAVE_MMAP64=1 \
++    -DUSE_FINDHTML=1 \
++    $(NULL)
++
++AM_CPPFLAGS+= \
++    $(NULL)
++
++AM_LDFLAGS += \
++    -L$(top_builddir)/glib-core \
++    -L$(top_builddir)/glib-adv \
++    -L$(top_builddir)/snap-core \
++    -L$(top_builddir)/snap-adv \
++    -L$(top_builddir)/snap-exp \
++    -lsnap-adv -lsnap-core -lglib-core
++    #-lsnap-exp -lsnap-adv -lsnap-core -lglib-adv -lglib-core
++
++#AM_CPPFLAGS += `pkg-config --cflags libxml-2.0`
++#AM_LDFLAGS += `pkg-config --libs libxml-2.0`
++AM_CPPFLAGS += $(LIBXML2_CFLAGS)
++AM_LDFLAGS += $(LIBXML2_LDFLAGS) $(LIBXML2_LIBS)
++
++#AM_CPPFLAGS += `pkg-config --cflags libxslt`
++#AM_LDFLAGS += `pkg-config --libs libxslt`
++AM_CPPFLAGS += $(LIBXSLT_CFLAGS)
++AM_LDFLAGS += $(LIBXSLT_LDFLAGS) $(LIBXSLT_LIBS)
++
++#AM_LDFLAGS += -pthread
++
++if DEBUG
++# use "valgrind --tool=memcheck --leak-check=yes" to check memory leak, MemWatch will drag the program.
++#DEFS+=-DMEMWATCH
++DEFS+= -DDEBUG=1
++DEFS+= -DNDEBUG=1
++
++AM_LDFLAGS += -lbfd
++AM_CPPFLAGS+=-g -Wall
++
++else
++AM_CPPFLAGS+=-O3 -Wall
++endif
++
++#AM_CPPFLAGS+=-fpermissive
++
++
++EXT_FLAGS=
++@MK@GITNUMTMP=$(shell cd "$(top_srcdir)"; A=$$(git show | head -n 1 | awk '{print $$2}'); echo $${A:0:7}; cd - > /dev/null )
++#@MK@SVNNUMTMP=$(shell cd "$(top_srcdir)"; LC_ALL=C svn info | grep -i Revision | awk '{print $$2}'; cd - > /dev/null )
++#@MK@ifeq ($(SVNNUMTMP),)
++#EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++#@MK@else
++#EXT_FLAGS+= -DSVN_VERSION='"${SVNNUMTMP}"'
++#@MK@endif
++@MK@ifeq ($(GITNUMTMP),)
++@MK@else
++EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++@MK@endif
++DEFS+=$(EXT_FLAGS)
++
++#AM_CPPFLAGS+=$(EXT_FLAGS)
++
++
++
++bin_PROGRAMS=snapagmgen snapgraphgen snapkrongen
++
++OTHER_BIN=snaplshtest snapmultimodal snaptestconv snapzygote
++
++noinst_PROGRAMS=snapagmfit snapbigclam snapcascades snapcentrality snapcesna snapcircles snapcliques snapcoda snapcommunity snapconcomp snapflows snapforestfire snapgraphhash snapinfopath snapkcores snapkronem snapkronfit snapmagfit snapmaggen snapmkdatasets snapmotifs snapncpplot snapnetevol snapnetinf snapnetstat snaprandwalk snaprolx snaptestgraph
++
++snapagmfit_SOURCES= \
++    agmfit/agmfitmain.cpp \
++    $(NULL)
++
++snapagmgen_SOURCES= \
++    agmgen/agmgen.cpp \
++    $(NULL)
++
++snapbigclam_SOURCES= \
++    bigclam/bigclam.cpp \
++    $(NULL)
++
++snapcascades_SOURCES= \
++    cascades/cascades.cpp \
++    $(NULL)
++
++snapcentrality_SOURCES= \
++    centrality/centrality.cpp \
++    $(NULL)
++
++snapcesna_SOURCES= \
++    cesna/cesna.cpp \
++    $(NULL)
++
++snapcircles_SOURCES= \
++    circles/circles.cpp \
++    $(NULL)
++
++snapcliques_SOURCES= \
++    cliques/cliquesmain.cpp \
++    $(NULL)
++
++snapcoda_SOURCES= \
++    coda/coda.cpp \
++    $(NULL)
++
++snapcommunity_SOURCES= \
++    community/community.cpp \
++    $(NULL)
++
++snapconcomp_SOURCES= \
++    concomp/concomp.cpp \
++    $(NULL)
++
++
++snapflows_SOURCES= \
++    flows/flows.cpp \
++    $(NULL)
++
++#snapflows_CPPFLAGS =
++snapflows_LDFLAGS = $(DEFS) -fopenmp
++snapflows_LDADD = $(AM_LDFLAGS)
++
++
++
++snapforestfire_SOURCES= \
++    forestfire/forestfire.cpp \
++    #dummy.cpp \
++    $(NULL)
++
++# force the autoconf use g++ to link the c program with c++ lib
++dummy.cpp:
++	touch $@
++
++#snapforestfire_LDADD = $(top_builddir)/src/libsnap-core.la -lbfd -liberty -ldl
++snapforestfire_LDADD = $(AM_LDFLAGS)
++
++snapforestfire_CPPFLAGS = $(AM_CPPFLAGS)
++snapforestfire_LDFLAGS = $(AM_LDFLAGS)
++#snapforestfire_LDFLAGS = -lchsetdet -lcrc -lpf -lz
++#$(LIBPF_LDFLAGS) $(LIBCHSETDET_LDFLAGS) $(HUNSPELL_LDFLAGS) $(LIBXML2_LDFLAGS) $(LIBXSLT_LDFLAGS) $(LIBCRC_LDFLAGS) $(ZLIB_LDFLAGS)
++
++
++snapgraphgen_SOURCES= \
++    graphgen/graphgen.cpp \
++    $(NULL)
++
++snapgraphhash_SOURCES= \
++    graphhash/graphhash.cpp \
++    $(NULL)
++
++snapinfopath_SOURCES= \
++    infopath/infopath.cpp \
++    $(NULL)
++
++snapkcores_SOURCES= \
++    kcores/kcores.cpp \
++    $(NULL)
++
++snapkronem_SOURCES= \
++    kronem/kronem.cpp \
++    $(NULL)
++
++snapkronfit_SOURCES= \
++    kronfit/kronfit.cpp \
++    $(NULL)
++
++snapkrongen_SOURCES= \
++    krongen/krongen.cpp \
++    $(NULL)
++
++#snaplshtest_SOURCES= \
++    #lshtest/lshtest.cpp \
++    #$(NULL)
++
++snapmagfit_SOURCES= \
++    magfit/magfit.cpp \
++    $(NULL)
++
++snapmaggen_SOURCES= \
++    maggen/maggen.cpp \
++    $(NULL)
++
++snapmkdatasets_SOURCES= \
++    mkdatasets/mkdatasets.cpp \
++    $(NULL)
++
++snapmotifs_SOURCES= \
++    motifs/motifs.cpp \
++    $(NULL)
++
++#snapmultimodal_SOURCES= \
++    #multimodal/subgraph-exp.cpp \
++    #$(NULL)
++
++snapncpplot_SOURCES= \
++    ncpplot/ncpplot.cpp \
++    $(NULL)
++
++snapnetevol_SOURCES= \
++    netevol/netevol.cpp \
++    $(NULL)
++
++snapnetinf_SOURCES= \
++    netinf/netinf.cpp \
++    $(NULL)
++
++snapnetstat_SOURCES= \
++    netstat/netstat.cpp \
++    $(NULL)
++
++snaprandwalk_SOURCES= \
++    randwalk/randwalk.cpp \
++    $(NULL)
++
++snaprolx_SOURCES= \
++    rolx/testrolx.cpp \
++    $(NULL)
++
++#snaptestconv_SOURCES= \
++    #testconv/convtest.cpp \
++    #$(NULL)
++
++snaptestgraph_SOURCES= \
++    testgraph/testgraph.cpp \
++    $(NULL)
++
++#snapzygote_SOURCES= \
++    #zygote/zydemo.cpp \
++    #$(NULL)
+diff --git a/glib-adv/Makefile.am b/glib-adv/Makefile.am
+new file mode 100644
+index 0000000..bf68ebd
+--- /dev/null
++++ b/glib-adv/Makefile.am
+@@ -0,0 +1,385 @@
++
++AM_CPPFLAGS=
++AM_LDFLAGS=
++
++# public headers
++# it will be moved to include/Makefile.am
++include_HEADERS = \
++    acquis.h \
++    adox.h \
++    aest.h \
++    amazon.h \
++    appsrv.h \
++    bde.h \
++    biling.h \
++    bix.h \
++    book.h \
++    bowactlearn.h \
++    bowbs.h \
++    bowclust.h \
++    bowfl.h \
++    bowflx.h \
++    bowlearn.h \
++    bowlinalg.h \
++    bowmatrix.h \
++    bowmd.h \
++    btalarms.h \
++    btaServer.h \
++    cache.h \
++    casino.h \
++    ccar.h \
++    cfyres.h \
++    cgi.h \
++    ciawfb.h \
++    conjgrad.h \
++    cordis.h \
++    corrgr.h \
++    cpdoc.h \
++    crawler.h \
++    cyc.h \
++    dm.h \
++    dmhd.h \
++    dmine.h \
++    dmoz.h \
++    dnet.h \
++    dzs.h \
++    email.h \
++    euproj.h \
++    exset.h \
++    fa.h \
++    flx.h \
++    ftrgen.h \
++    geoip.h \
++    gix.h \
++    gks.h \
++    gksmfc.h \
++    gksvcl.h \
++    gksvml.h \
++    gkswf.h \
++    google.h \
++    googlex.h \
++    graph.h \
++    gridvcl.h \
++    gsearch.h \
++    guid.h \
++    hashgenericmp.h \
++    hc.h \
++    hldoc.h \
++    infonet.h \
++    kernelmethods.h \
++    logreg.h \
++    lsionto.h \
++    md.h \
++    mdtr.h \
++    medline.h \
++    mg.h \
++    mindset.h \
++    mine.h \
++    mkcca.h \
++    mte.h \
++    mtr.h \
++    net.h \
++    netobj.h \
++    nlpwinlf.h \
++    nmen.h \
++    nmobj.h \
++    nntp.h \
++    nyta.h \
++    nytngrams.h \
++    odbc.h \
++    ontolight.h \
++    pest.h \
++    phrase.h \
++    pi.h \
++    postag.h \
++    prolog.h \
++    prologparser.h \
++    proxy.h \
++    rdbms.h \
++    roget.h \
++    sappsrv.h \
++    sch.h \
++    semspace.h \
++    sgraph.h \
++    skygrid.h \
++    smtp.h \
++    soap.h \
++    sock.h \
++    sock-new.h \
++    sqlite3.h \
++    sqlitedb.h \
++    ssch.h \
++    sskj.h \
++    ssqldm.h \
++    ssql.h \
++    stemming.h \
++    stopword.h \
++    strkernel.h \
++    strut.h \
++    subprocess.h \
++    svmbasic.h \
++    svmmodels.h \
++    svmPrLoqo.h \
++    tagcloud.h \
++    tb.h \
++    tbhc.h \
++    tbval.h \
++    term.h \
++    tmine.h \
++    tnt.h \
++    tql.h \
++    ts.h \
++    txtbs.h \
++    ultra.h \
++    valds.h \
++    valret.h \
++    vizmapgks.h \
++    vizmap.h \
++    wbmp.h \
++    webbsfetch.h \
++    webmb.h \
++    webnetobj.h \
++    webold.h \
++    webpgfetch.h \
++    websrv.h \
++    webtrv.h \
++    webtxtbs.h \
++    wikipedia.h \
++    wixexp.h \
++    wix.h \
++    wmine.h \
++    wordco.h \
++    wordnet.h \
++    xql.h \
++    yahoobs.h \
++    yahoodm.h \
++    yahooex.h \
++    zipcode.h \
++    $(NULL)
++
++# libglib:
++lib_LTLIBRARIES=libglib-adv.la
++
++OTHER_SOURCES= \
++    dmine.cpp \
++    tmine.cpp \
++    wmine.cpp \
++    acquis.cpp \
++    adox.cpp \
++    aest.cpp \
++    amazon.cpp \
++    appsrv.cpp \
++    bde.cpp \
++    biling.cpp \
++    bix.cpp \
++    book.cpp \
++    bowactlearn.cpp \
++    bowbs.cpp \
++    bowclust.cpp \
++    bowfl.cpp \
++    bowflx.cpp \
++    bowlearn.cpp \
++    bowlinalg.cpp \
++    bowmatrix.cpp \
++    bowmd.cpp \
++    btalarms.cpp \
++    btaserver.cpp \
++    casino.cpp \
++    ccar.cpp \
++    cfyres.cpp \
++    cgi.cpp \
++    ciawfb.cpp \
++    cordis.cpp \
++    corrgr.cpp \
++    cpdoc.cpp \
++    crawler.cpp \
++    cyc.cpp \
++    dm.cpp \
++    dmhd.cpp \
++    dmoz.cpp \
++    dnet.cpp \
++    dzs.cpp \
++    email.cpp \
++    euproj.cpp \
++    exset.cpp \
++    fa.cpp \
++    flx.cpp \
++    ftrgen.cpp \
++    geoip.cpp \
++    gix.cpp \
++    gks.cpp \
++    gksmfc.cpp \
++    gksvcl.cpp \
++    gksvml.cpp \
++    gkswf.cpp \
++    google.cpp \
++    googlex.cpp \
++    graph.cpp \
++    gridvcl.cpp \
++    gsearch.cpp \
++    guid.cpp \
++    hc.cpp \
++    hldoc.cpp \
++    infonet.cpp \
++    kernelmethods.cpp \
++    logreg.cpp \
++    lsionto.cpp \
++    md.cpp \
++    mdtr.cpp \
++    medline.cpp \
++    mg.cpp \
++    mkcca.cpp \
++    mte.cpp \
++    mtr.cpp \
++    net.cpp \
++    netobj.cpp \
++    nlpwinlf.cpp \
++    nmen.cpp \
++    nmobj.cpp \
++    nntp.cpp \
++    nyta.cpp \
++    nytngrams.cpp \
++    odbc.cpp \
++    ontolight.cpp \
++    pest.cpp \
++    phrase.cpp \
++    pi.cpp \
++    postag.cpp \
++    prolog.cpp \
++    prologparser.cpp \
++    proxy.cpp \
++    pww.cpp \
++    rdbms.cpp \
++    roget.cpp \
++    sappsrv.cpp \
++    sch.cpp \
++    semspace.cpp \
++    sgraph.cpp \
++    skygrid.cpp \
++    smtp.cpp \
++    soap.cpp \
++    sock.cpp \
++    sock-new.cpp \
++    sqlitedb.cpp \
++    ssch.cpp \
++    sskj.cpp \
++    ssql.cpp \
++    ssqldm.cpp \
++    stemming.cpp \
++    stopword.cpp \
++    strkernel.cpp \
++    strut.cpp \
++    subprocess.cpp \
++    svmbasic.cpp \
++    svmmodels.cpp \
++    svmPrLoqo.cpp \
++    tagcloud.cpp \
++    tb.cpp \
++    tbhc.cpp \
++    tbval.cpp \
++    term.cpp \
++    tnt.cpp \
++    tql.cpp \
++    ts.cpp \
++    txtbs.cpp \
++    ultra.cpp \
++    valds.cpp \
++    valret.cpp \
++    vizmap.cpp \
++    vizmapgks.cpp \
++    wbmp.cpp \
++    webbsfetch.cpp \
++    webmb.cpp \
++    webnetobj.cpp \
++    webold.cpp \
++    webpgfetch.cpp \
++    websrv.cpp \
++    webtrv.cpp \
++    webtxtbs.cpp \
++    wikipedia.cpp \
++    wix.cpp \
++    wixexp.cpp \
++    wordco.cpp \
++    wordnet.cpp \
++    xql.cpp \
++    yahoobs.cpp \
++    yahoodm.cpp \
++    yahooex.cpp \
++    zipcode.cpp \
++    $(NULL)
++
++libglib_adv_la_SOURCES= \
++    mine.cpp \
++    $(NULL)
++
++libglib_adv_la_CPPFLAGS=
++
++AM_CPPFLAGS+= \
++    $(NULL)
++
++DEFS+= \
++    -I$(top_srcdir)/glib-core \
++    -I$(top_srcdir)/glib-adv \
++    -I$(top_builddir)/ \
++    `getconf LFS_CFLAGS` \
++    `getconf LFS64_CFLAGS` \
++    -D_GNU_SOURCE \
++    -DHAVE_MMAP64=1 \
++    -I/usr/include/libiberty \
++    $(NULL)
++
++if DEBUG
++# use "valgrind --tool=memcheck --leak-check=yes" to check memory leak, MemWatch will drag the program.
++#DEFS+=-DMEMWATCH=1
++DEFS+= -DDEBUG=1
++DEFS+= -DNDEBUG=1
++
++AM_CPPFLAGS+=-g -Wall
++
++else
++AM_CPPFLAGS+=-O3
++endif
++
++AM_LDFLAGS += \
++    -L$(top_builddir)/glib-core \
++    -L$(top_builddir)/glib-adv \
++    $(top_builddir)/glib-core/libglib-core.la \
++    $(top_builddir)/glib-adv/libglib-adv.la \
++    #-lsnap-exp -lsnap-adv -lsnap-core -lglib-adv -lglib-core
++
++bin_PROGRAMS=testbase
++
++testbase_SOURCES= \
++    testBase.cpp \
++    base.cpp \
++    mine.cpp \
++    #dummy.cpp \
++    $(NULL)
++
++# force the autoconf use g++ to link the c program with c++ lib
++dummy.cpp:
++	touch $@
++
++#testbase_LDADD = -lsnap-exp -lsnap-adv -lsnap-core -lglib-adv -lglib-core
++testbase_LDADD = $(AM_LDFLAGS)
++
++testbase_CPPFLAGS = $(AM_CPPFLAGS)
++testbase_LDFLAGS = $(AM_LDFLAGS)
++#testbase_LDFLAGS = -lsnap-exp -lsnap-adv -lsnap-core -lglib-adv -lglib-core
++
++
++EXT_FLAGS=
++@MK@GITNUMTMP=$(shell cd "$(top_srcdir)"; A=$$(git show | head -n 1 | awk '{print $$2}'); echo $${A:0:7}; cd - > /dev/null )
++#@MK@SVNNUMTMP=$(shell cd "$(top_srcdir)"; LC_ALL=C svn info | grep -i Revision | awk '{print $$2}'; cd - > /dev/null )
++#@MK@ifeq ($(SVNNUMTMP),)
++#EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++#@MK@else
++#EXT_FLAGS+= -DSVN_VERSION='"${SVNNUMTMP}"'
++#@MK@endif
++@MK@ifeq ($(GITNUMTMP),)
++@MK@else
++EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++@MK@endif
++DEFS+=$(EXT_FLAGS)
++
++
+diff --git a/glib-core/Makefile.am b/glib-core/Makefile.am
+new file mode 100644
+index 0000000..3a97a11
+--- /dev/null
++++ b/glib-core/Makefile.am
+@@ -0,0 +1,125 @@
++
++AM_CPPFLAGS=
++AM_LDFLAGS=
++
++# public headers
++# it will be moved to include/Makefile.am
++nobase_include_HEADERS = \
++    $(top_srcdir)/glib-core/base.h \
++    $(top_srcdir)/glib-core/bd.h \
++    $(top_srcdir)/glib-core/bits.h \
++    $(top_srcdir)/glib-core/blobbs.h \
++    $(top_srcdir)/glib-core/ds.h \
++    $(top_srcdir)/glib-core/dt.h \
++    $(top_srcdir)/glib-core/env.h \
++    $(top_srcdir)/glib-core/fl.h \
++    $(top_srcdir)/glib-core/gnuplot.h \
++    $(top_srcdir)/glib-core/hash.h \
++    $(top_srcdir)/glib-core/hashmp.h \
++    $(top_srcdir)/glib-core/html.h \
++    $(top_srcdir)/glib-core/http.h \
++    $(top_srcdir)/glib-core/json.h \
++    $(top_srcdir)/glib-core/linalg.h \
++    $(top_srcdir)/glib-core/lx.h \
++    $(top_srcdir)/glib-core/md5.h \
++    $(top_srcdir)/glib-core/os.h \
++    $(top_srcdir)/glib-core/priorityqueue.h \
++    $(top_srcdir)/glib-core/shash.h \
++    $(top_srcdir)/glib-core/ss.h \
++    $(top_srcdir)/glib-core/ssmp.h \
++    $(top_srcdir)/glib-core/stdafx.h \
++    $(top_srcdir)/glib-core/tm.cpp \
++    $(top_srcdir)/glib-core/tm.h \
++    $(top_srcdir)/glib-core/unicode.h \
++    $(top_srcdir)/glib-core/unicodestring.h \
++    $(top_srcdir)/glib-core/url.h \
++    $(top_srcdir)/glib-core/ut.h \
++    $(top_srcdir)/glib-core/wch.h \
++    $(top_srcdir)/glib-core/xfl.h \
++    $(top_srcdir)/glib-core/xmath.h \
++    $(top_srcdir)/glib-core/xml.h \
++    $(top_srcdir)/glib-core/xmlser.h \
++    $(top_srcdir)/glib-core/zipfl.h \
++    $(NULL)
++
++# libglib:
++lib_LTLIBRARIES=libglib-core.la
++#libglib_core_la_SOURCES= \
++    base.cpp \
++    bd.cpp \
++    bits.cpp \
++    blobbs.cpp \
++    dt.cpp \
++    env.cpp \
++    fl.cpp \
++    gnuplot.cpp \
++    hash.cpp \
++    html.cpp \
++    http.cpp \
++    json.cpp \
++    linalg.cpp \
++    lx.cpp \
++    md5.cpp \
++    os.cpp \
++    ss.cpp \
++    ssmp.cpp \
++    unicode.cpp \
++    unicodestring.cpp \
++    url.cpp \
++    ut.cpp \
++    wch.cpp \
++    xfl.cpp \
++    xmath.cpp \
++    xml.cpp \
++    zipfl.cpp \
++    $(NULL)
++libglib_core_la_SOURCES= \
++    base.cpp \
++    $(NULL)
++
++libglib_core_la_CPPFLAGS=
++
++AM_CPPFLAGS+= \
++    $(NULL)
++
++DEFS+= \
++    -I$(top_srcdir)/glib-core \
++    -I$(top_srcdir)/glib-adv \
++    -I$(top_srcdir)/snap-core \
++    -I$(top_srcdir)/snap-adv \
++    -I$(top_srcdir)/snap-exp \
++    -I$(top_builddir)/ \
++    `getconf LFS_CFLAGS` \
++    `getconf LFS64_CFLAGS` \
++    -D_GNU_SOURCE \
++    -DHAVE_MMAP64=1 \
++    -I/usr/include/libiberty \
++    $(NULL)
++
++if DEBUG
++# use "valgrind --tool=memcheck --leak-check=yes" to check memory leak, MemWatch will drag the program.
++#DEFS+=-DMEMWATCH=1
++DEFS+= -DDEBUG=1
++DEFS+= -DNDEBUG=1
++
++AM_CPPFLAGS+=-g -Wall
++
++else
++AM_CPPFLAGS+=-O3
++endif
++
++EXT_FLAGS=
++@MK@GITNUMTMP=$(shell cd "$(top_srcdir)"; A=$$(git show | head -n 1 | awk '{print $$2}'); echo $${A:0:7}; cd - > /dev/null )
++#@MK@SVNNUMTMP=$(shell cd "$(top_srcdir)"; LC_ALL=C svn info | grep -i Revision | awk '{print $$2}'; cd - > /dev/null )
++#@MK@ifeq ($(SVNNUMTMP),)
++#EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++#@MK@else
++#EXT_FLAGS+= -DSVN_VERSION='"${SVNNUMTMP}"'
++#@MK@endif
++@MK@ifeq ($(GITNUMTMP),)
++@MK@else
++EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++@MK@endif
++DEFS+=$(EXT_FLAGS)
++
++
+diff --git a/libsnap.pc.in b/libsnap.pc.in
+new file mode 100644
+index 0000000..afad347
+--- /dev/null
++++ b/libsnap.pc.in
+@@ -0,0 +1,13 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: libsnap
++URL: https://github.com/snap-stanford/snap.git
++Description: Stanford Network Analysis Platform (SNAP) is a general purpose, high performance system for analysis and manipulation of large networks
++Version: @PACKAGE_VERSION@
++Requires: 
++#Libs: -L${libdir} -lsnap-exp -lsnap-adv -lsnap-core -lglib-adv -lglib-core
++Libs: -L${libdir} -lsnap-adv -lsnap-core -lglib-core
++Cflags: -I${includedir}
+diff --git a/snap-adv/Makefile.am b/snap-adv/Makefile.am
+new file mode 100644
+index 0000000..a879fa0
+--- /dev/null
++++ b/snap-adv/Makefile.am
+@@ -0,0 +1,89 @@
++
++AM_CPPFLAGS=
++AM_LDFLAGS=
++
++# public headers
++# it will be moved to include/Makefile.am
++nobase_include_HEADERS = \
++    $(top_srcdir)/snap-adv/agmattr.h \
++    $(top_srcdir)/snap-adv/agmdirected.h \
++    $(top_srcdir)/snap-adv/agmfast.h \
++    $(top_srcdir)/snap-adv/agmfit.h \
++    $(top_srcdir)/snap-adv/agm.h \
++    $(top_srcdir)/snap-adv/cascdynetinf.h \
++    $(top_srcdir)/snap-adv/cascnetinf.h \
++    $(top_srcdir)/snap-adv/circles.h \
++    $(top_srcdir)/snap-adv/cliques.h \
++    $(top_srcdir)/snap-adv/graphcounter.h \
++    $(top_srcdir)/snap-adv/kronecker.h \
++    $(top_srcdir)/snap-adv/mag.h \
++    $(top_srcdir)/snap-adv/ncp.h \
++    $(top_srcdir)/snap-adv/rolx.h \
++    $(top_srcdir)/snap-adv/subgraphenum.h \
++    $(NULL)
++
++# libsnap:
++lib_LTLIBRARIES=libsnap-adv.la
++libsnap_adv_la_SOURCES= \
++    agmattr.cpp \
++    agm.cpp \
++    agmdirected.cpp \
++    agmfast.cpp \
++    agmfit.cpp \
++    cascdynetinf.cpp \
++    cascnetinf.cpp \
++    cliques.cpp \
++    graphcounter.cpp \
++    kronecker.cpp \
++    mag.cpp \
++    ncp.cpp \
++    rolx.cpp \
++    subgraphenum.cpp \
++    $(NULL)
++
++libsnap_adv_la_CPPFLAGS=
++
++AM_CPPFLAGS+= \
++    $(NULL)
++
++DEFS+= \
++    -I$(top_srcdir)/glib-core \
++    -I$(top_srcdir)/glib-adv \
++    -I$(top_srcdir)/snap-core \
++    -I$(top_srcdir)/snap-adv \
++    -I$(top_srcdir)/snap-exp \
++    -I$(top_builddir)/ \
++    `getconf LFS_CFLAGS` \
++    `getconf LFS64_CFLAGS` \
++    -D_GNU_SOURCE \
++    -DHAVE_MMAP64=1 \
++    -I/usr/include/libiberty \
++    $(NULL)
++
++if DEBUG
++# use "valgrind --tool=memcheck --leak-check=yes" to check memory leak, MemWatch will drag the program.
++#DEFS+=-DMEMWATCH=1
++DEFS+= -DDEBUG=1
++DEFS+= -DNDEBUG=1
++
++AM_CPPFLAGS+=-g -Wall
++
++else
++AM_CPPFLAGS+=-O3
++endif
++
++EXT_FLAGS=
++@MK@GITNUMTMP=$(shell cd "$(top_srcdir)"; A=$$(git show | head -n 1 | awk '{print $$2}'); echo $${A:0:7}; cd - > /dev/null )
++#@MK@SVNNUMTMP=$(shell cd "$(top_srcdir)"; LC_ALL=C svn info | grep -i Revision | awk '{print $$2}'; cd - > /dev/null )
++#@MK@ifeq ($(SVNNUMTMP),)
++#EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++#@MK@else
++#EXT_FLAGS+= -DSVN_VERSION='"${SVNNUMTMP}"'
++#@MK@endif
++@MK@ifeq ($(GITNUMTMP),)
++@MK@else
++EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++@MK@endif
++DEFS+=$(EXT_FLAGS)
++
++
+diff --git a/snap-core/Makefile.am b/snap-core/Makefile.am
+new file mode 100644
+index 0000000..818da9f
+--- /dev/null
++++ b/snap-core/Makefile.am
+@@ -0,0 +1,159 @@
++
++AM_CPPFLAGS=
++AM_LDFLAGS=
++
++# public headers
++# it will be moved to include/Makefile.am
++nobase_include_HEADERS = \
++    $(top_srcdir)/snap-core/alg.h \
++    $(top_srcdir)/snap-core/anf.h \
++    $(top_srcdir)/snap-core/attr.h \
++    $(top_srcdir)/snap-core/bfsdfs.h \
++    $(top_srcdir)/snap-core/bignet.h \
++    $(top_srcdir)/snap-core/centr.h \
++    $(top_srcdir)/snap-core/cmty.h \
++    $(top_srcdir)/snap-core/cncom.h \
++    $(top_srcdir)/snap-core/conv.h \
++    $(top_srcdir)/snap-core/coreper.h \
++    $(top_srcdir)/snap-core/ff.h \
++    $(top_srcdir)/snap-core/flow.h \
++    $(top_srcdir)/snap-core/gbase.h \
++    $(top_srcdir)/snap-core/ggen.h \
++    $(top_srcdir)/snap-core/ghash.h \
++    $(top_srcdir)/snap-core/gio.h \
++    $(top_srcdir)/snap-core/graph.h \
++    $(top_srcdir)/snap-core/graphmp.h \
++    $(top_srcdir)/snap-core/gstat.h \
++    $(top_srcdir)/snap-core/gsvd.h \
++    $(top_srcdir)/snap-core/gviz.h \
++    $(top_srcdir)/snap-core/kcore.h \
++    $(top_srcdir)/snap-core/network.h \
++    $(top_srcdir)/snap-core/networkmp.h \
++    $(top_srcdir)/snap-core/numpy.h \
++    $(top_srcdir)/snap-core/randwalk.h \
++    $(top_srcdir)/snap-core/Snap.h \
++    $(top_srcdir)/snap-core/statplot.h \
++    $(top_srcdir)/snap-core/stdafx.h \
++    $(top_srcdir)/snap-core/subgraph.h \
++    $(top_srcdir)/snap-core/table.h \
++    $(top_srcdir)/snap-core/timenet.h \
++    $(top_srcdir)/snap-core/triad.h \
++    $(top_srcdir)/snap-core/util.h \
++    $(NULL)
++
++# libsnap:
++lib_LTLIBRARIES=libsnap-core.la
++
++OTHER_SOURCES= \
++    alg.cpp \
++    anf.cpp \
++    attr.cpp \
++    centr.cpp \
++    cmty.cpp \
++    cncom.cpp \
++    coreper.cpp \
++    ff.cpp \
++    flow.cpp \
++    gbase.cpp \
++    ggen.cpp \
++    ghash.cpp \
++    gio.cpp \
++    graph.cpp \
++    graphmp.cpp \
++    gstat.cpp \
++    gsvd.cpp \
++    gviz.cpp \
++    network.cpp \
++    networkmp.cpp \
++    numpy.cpp \
++    statplot.cpp \
++    subgraph.cpp \
++    testSnap.cpp \
++    timenet.cpp \
++    table.cpp \
++    triad.cpp \
++    util.cpp \
++    $(NULL)
++
++libsnap_core_la_SOURCES= \
++    Snap.cpp \
++    $(NULL)
++
++libsnap_core_la_CPPFLAGS=
++
++AM_CPPFLAGS+= \
++    $(NULL)
++
++DEFS+= \
++    -I$(top_srcdir)/glib-core \
++    -I$(top_srcdir)/glib-adv \
++    -I$(top_srcdir)/snap-core \
++    -I$(top_srcdir)/snap-adv \
++    -I$(top_srcdir)/snap-exp \
++    -I$(top_builddir)/ \
++    `getconf LFS_CFLAGS` \
++    `getconf LFS64_CFLAGS` \
++    -D_GNU_SOURCE \
++    -DHAVE_MMAP64=1 \
++    -I/usr/include/libiberty \
++    $(NULL)
++
++if DEBUG
++# use "valgrind --tool=memcheck --leak-check=yes" to check memory leak, MemWatch will drag the program.
++#DEFS+=-DMEMWATCH=1
++DEFS+= -DDEBUG=1
++DEFS+= -DNDEBUG=1
++
++AM_CPPFLAGS+=-g -Wall
++
++else
++AM_CPPFLAGS+=-O3
++endif
++
++noinst_PROGRAMS=testsnap
++
++testsnap_SOURCES= \
++    testSnap.cpp \
++    #dummy.cpp \
++    $(NULL)
++
++# force the autoconf use g++ to link the c program with c++ lib
++dummy.cpp:
++	touch $@
++
++#testsnap_LDADD = -lsnap-exp -lsnap-adv -lsnap-core -lglib-adv -lglib-core
++testsnap_LDADD = $(AM_LDFLAGS)
++
++testsnap_CPPFLAGS = $(AM_CPPFLAGS)
++testsnap_LDFLAGS = $(AM_LDFLAGS)
++#testsnap_LDFLAGS = -lsnap-exp -lsnap-adv -lsnap-core -lglib-adv -lglib-core
++
++testsnap_LDFLAGS += \
++    -L$(top_builddir)/glib-core \
++    -L$(top_builddir)/glib-adv \
++    -L$(top_builddir)/snap-core \
++    -L$(top_builddir)/snap-adv \
++    -L$(top_builddir)/snap-exp \
++    $(top_builddir)/glib-core/libglib-core.la \
++    $(top_builddir)/snap-core/libsnap-core.la \
++    #$(top_builddir)/snap-adv/libsnap-adv.la \
++    #$(top_builddir)/snap-exp/libsnap-exp.la \
++    #$(top_builddir)/glib-adv/libglib-adv.la \
++    #-lsnap-exp -lsnap-adv -lsnap-core -lglib-adv -lglib-core
++
++
++EXT_FLAGS=
++@MK@GITNUMTMP=$(shell cd "$(top_srcdir)"; A=$$(git show | head -n 1 | awk '{print $$2}'); echo $${A:0:7}; cd - > /dev/null )
++#@MK@SVNNUMTMP=$(shell cd "$(top_srcdir)"; LC_ALL=C svn info | grep -i Revision | awk '{print $$2}'; cd - > /dev/null )
++#@MK@ifeq ($(SVNNUMTMP),)
++#EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++#@MK@else
++#EXT_FLAGS+= -DSVN_VERSION='"${SVNNUMTMP}"'
++#@MK@endif
++@MK@ifeq ($(GITNUMTMP),)
++@MK@else
++EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++@MK@endif
++DEFS+=$(EXT_FLAGS)
++
++
+diff --git a/snap-exp/Makefile.am b/snap-exp/Makefile.am
+new file mode 100644
+index 0000000..4bb8f5b
+--- /dev/null
++++ b/snap-exp/Makefile.am
+@@ -0,0 +1,98 @@
++
++AM_CPPFLAGS=
++AM_LDFLAGS=
++
++# public headers
++# it will be moved to include/Makefile.am
++include_HEADERS = \
++    alternativetable.h \
++    arxiv.h \
++    centr-exp.h \
++    dblp.h \
++    imdbnet.h \
++    linkpred.h \
++    lsh.h \
++    memenet.h \
++    memes.h \
++    mmgraph-exp.h \
++    mxdag.h \
++    signnet.h \
++    sir.h \
++    spinn3r.h \
++    trawling.h \
++    wgtnet.h \
++    wikinet.h \
++    $(NULL)
++
++# libsnap:
++lib_LTLIBRARIES=libsnap-exp.la
++
++OHTER_SOURCES= \
++    alternativetable.cpp \
++    $(NULL)
++
++libsnap_exp_la_SOURCES= \
++    arxiv.cpp \
++    centr-exp.cpp \
++    dblp.cpp \
++    imdbnet.cpp \
++    linkpred.cpp \
++    lsh.cpp \
++    memenet.cpp \
++    memes.cpp \
++    mmgraph-exp.cpp \
++    mxdag.cpp \
++    signnet.cpp \
++    sir.cpp \
++    spinn3r.cpp \
++    trawling.cpp \
++    wgtnet.cpp \
++    wikinet.cpp \
++    $(NULL)
++
++libsnap_exp_la_CPPFLAGS=
++
++AM_CPPFLAGS+= \
++    $(NULL)
++
++DEFS+= \
++    -I$(top_srcdir)/glib-core \
++    -I$(top_srcdir)/glib-adv \
++    -I$(top_srcdir)/snap-core \
++    -I$(top_srcdir)/snap-adv \
++    -I$(top_srcdir)/snap-exp \
++    -I$(top_builddir)/ \
++    `getconf LFS_CFLAGS` \
++    `getconf LFS64_CFLAGS` \
++    -D_GNU_SOURCE \
++    -DHAVE_MMAP64=1 \
++    -I/usr/include/libiberty \
++    $(NULL)
++
++if DEBUG
++# use "valgrind --tool=memcheck --leak-check=yes" to check memory leak, MemWatch will drag the program.
++#DEFS+=-DMEMWATCH=1
++DEFS+= -DDEBUG=1
++DEFS+= -DNDEBUG=1
++
++AM_CPPFLAGS+=-g -Wall
++
++else
++AM_CPPFLAGS+=-O3
++endif
++
++EXT_FLAGS=
++@MK@GITNUMTMP=$(shell cd "$(top_srcdir)"; A=$$(git show | head -n 1 | awk '{print $$2}'); echo $${A:0:7}; cd - > /dev/null )
++#@MK@SVNNUMTMP=$(shell cd "$(top_srcdir)"; LC_ALL=C svn info | grep -i Revision | awk '{print $$2}'; cd - > /dev/null )
++#@MK@ifeq ($(SVNNUMTMP),)
++#EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++#@MK@else
++#EXT_FLAGS+= -DSVN_VERSION='"${SVNNUMTMP}"'
++#@MK@endif
++@MK@ifeq ($(GITNUMTMP),)
++@MK@else
++EXT_FLAGS+= -DSVN_VERSION='"${GITNUMTMP}"'
++@MK@endif
++DEFS+=$(EXT_FLAGS)
++
++