diff options
| -rw-r--r-- | .SRCINFO | 19 | ||||
| -rw-r--r-- | PKGBUILD | 35 |
2 files changed, 24 insertions, 30 deletions
@@ -1,17 +1,14 @@ pkgbase = phylonet - pkgdesc = TA suite of software tools for reconstructing/analyzing phylogenetic networks in the presence of reticulate evolutionary events - pkgver = 3.8.2 - pkgrel = 1 + pkgdesc = suite of software tools for reconstructing/analyzing phylogenetic networks in the presence of reticulate evolutionary events. https://doi.org/10.1093/sysbio/syy015 + pkgver = 3.8.4 + pkgrel = 3 url = https://bioinfocs.rice.edu/PhyloNet arch = x86_64 license = GPL2 - depends = jre-openjdk-headless - depends = jre-openjdk - depends = jdk-openjdk - depends = openjdk-doc - depends = openjdk-src - source = https://bioinfocs.rice.edu/sites/g/files/bxs266/f/kcfinder/files/PhyloNet_3.8.2.jar - sha256sums = 0aa9c0e90c751ba14202e193f415d415fd9586a9a2b74c9fb22bbcaf306168d0 + makedepends = ant + makedepends = java-environment=8 + depends = java-runtime + source = phylonet-3.8.4::https://github.com/NakhlehLab/PhyloNet/archive/refs/tags/3.8.4.tar.gz + sha256sums = 08f71a6d9385d2cb4b6125da6138008d413050e2d6f427f9875f1cff79852ab1 pkgname = phylonet - @@ -1,27 +1,24 @@ -# Maintainer: Malacology <guoyizhang at malacology dot com> -# Contributor: Malacology <guoyizhang at malacology dot com> +# Maintainer: Malacology <guoyizhang at malacology dot net> +# Contributor: Malacology <guoyizhang at malacology dot net> pkgname=phylonet -_installname=PhyloNet -pkgver=3.8.2 -pkgrel=1 -depends=( - 'jre-openjdk-headless' - 'jre-openjdk' - 'jdk-openjdk' - 'openjdk-doc' - 'openjdk-src' -) -pkgdesc="TA suite of software tools for reconstructing/analyzing phylogenetic networks in the presence of reticulate evolutionary events" +_pkgname=PhyloNet +pkgver=3.8.4 +pkgrel=3 +depends=('java-runtime') +makedepends=('ant' 'java-environment=8') +pkgdesc="suite of software tools for reconstructing/analyzing phylogenetic networks in the presence of reticulate evolutionary events. https://doi.org/10.1093/sysbio/syy015" arch=('x86_64') url="https://bioinfocs.rice.edu/PhyloNet" license=('GPL2') -source=("https://bioinfocs.rice.edu/sites/g/files/bxs266/f/kcfinder/files/PhyloNet_3.8.2.jar") -sha256sums=('0aa9c0e90c751ba14202e193f415d415fd9586a9a2b74c9fb22bbcaf306168d0') - +source=("$pkgname-$pkgver::https://github.com/NakhlehLab/PhyloNet/archive/refs/tags/${pkgver}.tar.gz") +sha256sums=('08f71a6d9385d2cb4b6125da6138008d413050e2d6f427f9875f1cff79852ab1') +build() { + cd $_pkgname-$pkgver + ant jar +} package() { - install -dm755 "$pkgdir"/usr/{bin,share/phylonet} - install -Dm644 ${srcdir}/${_installname}_${pkgver}.jar ${pkgdir}/usr/share/phylonet/${_installname}.jar - ln -s /usr/share/phylonet/${_installname}.jar ${pkgdir}/usr/bin/${_installname}.jar + cd $_pkgname-$pkgver + install -Dm 755 build/jar/$_pkgname.jar ${pkgdir}/usr/share/phylonet/$_pkgname.jar } |