diff options
| -rw-r--r-- | .SRCINFO | 24 | ||||
| -rw-r--r-- | .gitignore | 1 | ||||
| -rw-r--r-- | PKGBUILD | 59 |
3 files changed, 29 insertions, 55 deletions
@@ -1,25 +1,17 @@ pkgbase = python-cyvcf2 - pkgdesc = Fast VCF/BCF processor in Python using Cython and htslib - pkgver = 0.8.6 + pkgdesc = fast vcf parsing with cython + htslib + pkgver = 0.30.14 pkgrel = 1 url = https://pypi.python.org/pypi/cyvcf2 arch = any license = MIT - makedepends = python + makedepends = cython makedepends = python-setuptools - makedepends = python2 - makedepends = python2-setuptools - options = !emptydirs - source = python-cyvcf2-0.8.6.tar.gz::https://pypi.python.org/packages/39/c9/b2b5d29b945e5599cddc0f04aa10e7f50e45d80a32cf22aa639d0b3a201b/cyvcf2-0.8.6.tar.gz - sha256sums = eca706d5c94786fe94c27839772f16d0e1b04de6569857ef2180035f6d07b03d - -pkgname = python-cyvcf2 - depends = python depends = python-numpy + depends = python-coloredlogs + depends = python-click depends = htslib + source = https://pypi.org/packages/source/c/cyvcf2/cyvcf2-0.30.14.tar.gz + sha512sums = 588d7bed6e29780f1ff10e09276172613e5bf478647eb0cd2566c62c8e0eca586648dfc5e88917ae07e8b2a2c32ba262f9dcf4f38e43fe50a7414cc0336501e4 -pkgname = python2-cyvcf2 - depends = python2 - depends = python2-numpy - depends = htslib - +pkgname = python-cyvcf2 diff --git a/.gitignore b/.gitignore new file mode 100644 index 000000000000..f59ec20aabf5 --- /dev/null +++ b/.gitignore @@ -0,0 +1 @@ +*
\ No newline at end of file @@ -1,45 +1,26 @@ -# Maintainer: Clint Valentine <valentine.clint@gmail.com> - -_name=cyvcf2 -pkgbase='python-cyvcf2' -pkgname=('python-cyvcf2' 'python2-cyvcf2') -pkgver=0.8.6 +# Contributor: Clint Valentine <valentine.clint@gmail.com> +_base=cyvcf2 +pkgname=python-${_base} +pkgver=0.30.14 pkgrel=1 -pkgdesc="Fast VCF/BCF processor in Python using Cython and htslib" +pkgdesc="fast vcf parsing with cython + htslib" arch=('any') -url=https://pypi.python.org/pypi/"${_name}" -license=('MIT') -makedepends=( - 'python' 'python-setuptools' - 'python2' 'python2-setuptools') -options=(!emptydirs) -source=("${pkgname}"-"${pkgver}".tar.gz::https://pypi.python.org/packages/39/c9/b2b5d29b945e5599cddc0f04aa10e7f50e45d80a32cf22aa639d0b3a201b/cyvcf2-0.8.6.tar.gz) -sha256sums=('eca706d5c94786fe94c27839772f16d0e1b04de6569857ef2180035f6d07b03d') - -prepare() { - cp -a "${_name}"-"${pkgver}"{,-py2} -} - -build(){ - cd "${srcdir}"/"${_name}"-"${pkgver}" +url="https://pypi.python.org/pypi/${_base}" +license=(MIT) +depends=(python-numpy python-coloredlogs python-click htslib) +makedepends=(cython python-setuptools) +# options=(!emptydirs) +source=(https://pypi.org/packages/source/${_base::1}/${_base}/${_base}-${pkgver}.tar.gz) +sha512sums=('588d7bed6e29780f1ff10e09276172613e5bf478647eb0cd2566c62c8e0eca586648dfc5e88917ae07e8b2a2c32ba262f9dcf4f38e43fe50a7414cc0336501e4') + +build() { + cd "${_base}-${pkgver}" python setup.py build - - cd "${srcdir}"/"${_name}"-"${pkgver}"-py2 - python2 setup.py build } -package_python2-cyvcf2() { - depends=('python2' 'python2-numpy' 'htslib') - - cd "${_name}"-"${pkgver}"-py2 - python2 setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build - install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE -} - -package_python-cyvcf2() { - depends=('python' 'python-numpy' 'htslib') - - cd "${_name}"-"${pkgver}" - python setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build - install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE +package() { + cd "${_base}-${pkgver}" + export PYTHONHASHSEED=0 + PYTHONPYCACHEPREFIX="${PWD}/.cache/cpython/" python setup.py install --prefix=/usr --root="${pkgdir}" --optimize=1 --skip-build + install -Dm 644 LICENSE -t "${pkgdir}/usr/share/licenses/${pkgname}" } |