diff options
| -rw-r--r-- | .SRCINFO | 27 | ||||
| -rw-r--r-- | PKGBUILD | 63 |
2 files changed, 66 insertions, 24 deletions
@@ -1,18 +1,27 @@ pkgbase = python-pyvcf-git - pkgdesc = A Variant Call Format reader for Python. + pkgdesc = A Variant Call Format reader for Python pkgver = v0.5.0.r266.g476169c - pkgrel = 1 - url = https://github.com/jamescasbon/PyVCF + pkgrel = 2 + url = https://pypi.python.org/pypi/PyVCF arch = any - license = BSD - makedepends = cython + license = custom:population-genetics-technologies + makedepends = python makedepends = python-setuptools + makedepends = cython + makedepends = python2 + makedepends = python2-setuptools + makedepends = cython2 + options = !emptydirs + source = PyVCF-v0.5.0.r266.g476169c::git+https://github.com/jamescasbon/PyVCF.git + sha256sums = SKIP + +pkgname = python-pyvcf-git depends = python provides = python-pyvcf conflicts = python-pyvcf - options = !emptydirs - source = git+https://github.com/jamescasbon/PyVCF.git - md5sums = SKIP -pkgname = python-pyvcf-git +pkgname = python2-pyvcf-git + depends = python2 + provides = python2-pyvcf + conflicts = python2-pyvcf @@ -1,26 +1,59 @@ # Maintainer: Clint Valentine <valentine.clint@gmail.com> -pkgname='python-pyvcf-git' +_name=PyVCF +pkgbase='python-pyvcf-git' +pkgname=('python-pyvcf-git' 'python2-pyvcf-git') pkgver=v0.5.0.r266.g476169c -pkgrel=1 -pkgdesc="A Variant Call Format reader for Python." +pkgrel=2 +pkgdesc="A Variant Call Format reader for Python" arch=('any') -url="https://github.com/jamescasbon/PyVCF" -license=('BSD') -depends=('python') -makedepends=('cython' 'python-setuptools') -provides=('python-pyvcf') -conflicts=('python-pyvcf') +url=https://pypi.python.org/pypi/"${_name}" +license=('custom:population-genetics-technologies') +makedepends=( + 'python' 'python-setuptools' 'cython' + 'python2' 'python2-setuptools' 'cython2') options=(!emptydirs) -source=("git+https://github.com/jamescasbon/PyVCF.git") -md5sums=('SKIP') +source=("${_name}"-"${pkgver}"::git+https://github.com/jamescasbon/"${_name}".git) +sha256sums=('SKIP') pkgver() { - cd "PyVCF" + cd "${srcdir}"/"${_name}"-"${pkgver}" git describe --long | sed 's/\([^-]*-g\)/r\1/;s/-/./g' } -package() { - cd "${srcdir}/PyVCF" - python setup.py install --root="${pkgdir}/" --optimize=1 +prepare() { + cp -a "${_name}"-"${pkgver}"{,-py2} +} + +build(){ + cd "${srcdir}"/"${_name}"-"${pkgver}" + python setup.py build + + cd "${srcdir}"/"${_name}"-"${pkgver}"-py2 + python2 setup.py build +} + +package_python2-pyvcf-git() { + depends=('python2') + provides=('python2-pyvcf') + conflicts=('python2-pyvcf') + + cd "${_name}"-"${pkgver}"-py2 + python2 setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build + install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE + + mv "${pkgdir}"/usr/bin/vcf_melt "${pkgdir}"/usr/bin/vcf_melt2 + for script in "${pkgdir}"/usr/bin/*.py; do + mv "${script}" "${pkgdir}"/usr/bin/$(basename "${script%.py}2.py") + done +} + +package_python-pyvcf-git() { + depends=('python') + provides=('python-pyvcf') + conflicts=('python-pyvcf') + + cd "${_name}"-"${pkgver}" + python setup.py install --root="${pkgdir}"/ --optimize=1 --skip-build + install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"/LICENSE } |